rs250599079 SNP Detail

Summary

• ID
  rs250599079
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31196275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTACAGA CAAAACCAAA
  GTGGCAGTTT GGGCACTACT TTTCTGACCA CATTCTTCCA AATGGTGACA AGATGACTGC
  CATAAAATGC GTGCTTGGTT GGAAATAAGA TGATCAGGGA AACATGCTTA TCCCTTAATC
  ATACTGTGCA TGCTACACAC TAGAAATTAT ATATACATAT ATATGCGTGT GTGTGGACAG
  W
  GCGCAAACGT GCATTTTCCT GATATTCCAA ACCACCAATT CTGTCCCCAC TGCTAGCATT
  TAACTTAAGT ATTAGCGTTT AAAGGCTTAT TCGTGTCTAG TGATGTATGG AAACTAAGTT
  TGAAGTCCTT AGTCTTAATG ACTTGCAATG TATGTGTGTG CAAGGTGTGT GGGGGGGGGG
  GTCTACTTCG AATCGCAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367847427	MGP_WTSI_6_31169340	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250599079					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367847427	MGP_WTSI_6_31169340	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31196275 () rs orientation: forward

Symbol	Name	Function Class
2210408F21Rik	RIKEN cDNA 2210408F21 gene	1011 bp upstream
Cpgi17266	CpG island 17266	1927 bp distal
Cpgi17267	CpG island 17267	549 bp distal
Cpgi17268	CpG island 17268	958 bp proximal
Gm67814	predicted gene, 67814	1775 bp downstream
Lncpint	long non-protein coding RNA, Trp53 induced transcript	866 bp upstream
Rr379139	regulatory region 379139	within coordinates
Rr627938	regulatory region 627938	1836 bp distal
Rr627939	regulatory region 627939	1335 bp distal
Rr627940	regulatory region 627940	141 bp distal
Rr627941	regulatory region 627941	327 bp proximal
Rr627942	regulatory region 627942	1130 bp proximal
Rr627943	regulatory region 627943	1320 bp proximal
Tssr55458	transcription start site region 55458	1003 bp upstream
Tssr55459	transcription start site region 55459	1060 bp upstream
Tssr55460	transcription start site region 55460	1092 bp upstream
Tssr60177	transcription start site region 60177	1816 bp upstream
Tssr60178	transcription start site region 60178	1672 bp upstream
Tssr60179	transcription start site region 60179	953 bp upstream
Tssr60180	transcription start site region 60180	900 bp upstream
Tssr60181	transcription start site region 60181	875 bp upstream
Tssr60182	transcription start site region 60182	855 bp upstream
Tssr60183	transcription start site region 60183	626 bp upstream
Tssr60184	transcription start site region 60184	295 bp upstream
Tssr60185	transcription start site region 60185	897 bp downstream
Tssr60186	transcription start site region 60186	947 bp downstream
Tssr60187	transcription start site region 60187	959 bp downstream