rs250604046 SNP Detail

Summary

• ID
  rs250604046
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80160615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGTGAAG TAGGGACGGG
  GGGGGGGGGT GGGGGGGGCA GAGGCCACAC AGTCAATGGC CCAATGATGG GGAACCTCAG
  AGTCAGCCCG TACAAAGGGA ATGTTCTTCA GAGAGCCTCC ATGTGGCAGG GGCACAAATA
  GACCAGGCAC TGGCACAGAT CTTGCCCGAG GGGGGTGGCC GGGCAGAAGG GGCAGGGCCT
  R
  TGTGGCCAGG TCTTGTGGAG TGGGACTTGC TTGGGGACTG GGATCTGGAG GGATGTGGCC
  ACTGCCTGGG GGTGAAGCCT GGGGTGGTGG GGTCTAGGTG AAGACCCCCT GCAGGCGGGG
  CCTGTGGTGT GGGCTTGGCT GTATGCTCAC GATCTGTGGG TCGGTGACCA CACCGCTGCT
  GAAGGTGGTG GTAAACGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381017690	MGP_WTSI_10_79787526	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250604046					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381017690	MGP_WTSI_10_79787526	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80160615 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1871	CpG island 1871	758 bp distal
Pcsk4	proprotein convertase subtilisin/kexin type 4	within coordinates
Rr435192	regulatory region 435192	1909 bp distal
Rr435193	regulatory region 435193	1025 bp distal
Rr435194	regulatory region 435194	409 bp distal
Tssr94549	transcription start site region 94549	1260 bp downstream
Tssr98422	transcription start site region 98422	1735 bp upstream
Tssr98423	transcription start site region 98423	1693 bp upstream
Tssr98424	transcription start site region 98424	1648 bp upstream
Tssr98425	transcription start site region 98425	1353 bp upstream
Tssr98426	transcription start site region 98426	986 bp upstream