rs250607446 SNP Detail

Summary

• ID
  rs250607446
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:134273060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCAGCGC TCGGATCTGT
  GAAGCCTCCT TTTCTCGCGT GAGGAGTGGC TGCGCCTCCC GGGTTGGGTC GGTGCCGCCT
  TTCCCGCCCT GGATGGTAGG GGACACTCAG GCGCTCCTGT GTCCCCGGGG CTCTGGAAAC
  GGACCTCGAG GGCGGGGACC TGGTTTTGCC TTTGTCGCTT CCCTAGGGGG TAGAAGGAGT
  M
  GGGTTGCAAG CTTACTTTTG ATCCAAGGAG TCCCGCTTTC CTCAATGGCC AGACAGTCCC
  AGAGCCCTGC AGACCTTGTC TCGCCCCCCA GCTAGCCCAC ATCAAAAGTC AGGTCTGTCT
  AGGCCTCAGG GCTCGCTGGC ATTCCAGATT TGACCATTCC GTTTCCAGGC TCCTGCTCTC
  TTTTCCCTAA GGATCCTCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322457601	CHEV_7_141863014	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250607446					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:134273060 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19845	CpG island 19845			within coordinates
Dock1	dedicator of cytokinesis 1			Intron
				Noncoding-Transcript-Variant
Rr656983	regulatory region 656983			1498 bp distal
Rr656984	regulatory region 656984			634 bp distal
Rr656985	regulatory region 656985			within coordinates
Tssr69615	transcription start site region 69615			1625 bp downstream
Tssr69616	transcription start site region 69616			670 bp downstream
Tssr69617	transcription start site region 69617			616 bp downstream