rs250610838 SNP Detail

Summary

• ID
  rs250610838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32247946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCTCCC TCCCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TTTCTTTCTT TCTTTCTTTC TTTCTTTCTC CTTTCTTTCT
  TTCTTTCTTT CTCCTTTCTC TCTTTCTTTC TTCTCTTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTGTC TCTCTCTCTC TCTCTCTTTC TTCCATTTTT TCTTTCAGAT AAGGCTTCAT
  R
  TAGCACAGTC TGGCCTCAAA AACTTTTATA TAGATAAGGA TGCCCTGAAA CTCTTGATCC
  TCTTGTTTCT ACCCCATGAG TGCTGGGTTT TTGATATGTG CCTTCATGTC CAGTTTATGC
  ATTGCTTGGG AACTGAACTA AGGCTAGTAT ATGTACTTAC ATACATACAT ACATACATAC
  ATACACAAGC ATTCTACTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382906482	MGP_WTSI_11_32197946	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250610838					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382906482	MGP_WTSI_11_32197946	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32247946 () rs orientation: forward

Symbol	Name	Function Class
Gm73808	predicted gene, 73808	1980 bp downstream
Gm74521	predicted gene, 74521	640 bp upstream
Hba-a2	hemoglobin alpha, adult chain 2	648 bp downstream
Rr444569	regulatory region 444569	1447 bp distal
Rr444570	regulatory region 444570	150 bp distal
Rr444571	regulatory region 444571	1120 bp proximal
Rr444572	regulatory region 444572	1633 bp proximal
Tssr100842	transcription start site region 100842	1454 bp downstream
Tssr100843	transcription start site region 100843	787 bp downstream
Tssr100844	transcription start site region 100844	382 bp downstream