rs250613242 SNP Detail

Summary

• ID
  rs250613242
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGAAGAG TGGACTAGAT
  CACAATCTGT TAGGAACTGA AGTTTGACCG GCCTTTCCAT ATGGAGATGT CCTTGCTGAA
  GGCCATGCCA TTCTCCCAAG CGGCAGGTAA GTTTAAAGAC TCAAAGATGC ATCTTCCTCA
  CTGTTGGAGA ACACAGAAGT GATCTATGTA CTGATAGATA GATAAGCTAG ACCCAAGGAT
  K
  TAGAAAGAAC AGGATGACAT AGTGACCATT AAAGTCTCTT TATACAGACA TCTGCTTTCT
  ACCTGTTCCT TCATATCAAT TCTCATGAGC AAGACAGATG TGCAAGACAG ATGTGAAAAG
  GAGAATCCCT TTCTTCTTGT TGCATTTGTT AGAGAATTGA TCTGTACAGT CTAAAAAGAG
  GTCTTTCAGG TTATGGCAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922396	MGP_WTSI_6_123233169	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250613242					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922396	MGP_WTSI_6_123233169	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260110 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	371 bp downstream
Tssr58809	transcription start site region 58809	241 bp upstream
Tssr58810	transcription start site region 58810	267 bp upstream
Tssr58811	transcription start site region 58811	303 bp upstream
Tssr63019	transcription start site region 63019	1579 bp upstream
Tssr63020	transcription start site region 63020	647 bp upstream
Tssr63021	transcription start site region 63021	569 bp upstream
Tssr63022	transcription start site region 63022	530 bp upstream
Tssr63023	transcription start site region 63023	475 bp upstream
Tssr63024	transcription start site region 63024	377 bp upstream
Tssr63025	transcription start site region 63025	345 bp upstream
Tssr63026	transcription start site region 63026	324 bp upstream
Tssr63027	transcription start site region 63027	286 bp upstream
Tssr63028	transcription start site region 63028	261 bp upstream
Tssr63029	transcription start site region 63029	233 bp upstream
Tssr63030	transcription start site region 63030	177 bp upstream
Tssr63031	transcription start site region 63031	147 bp upstream
Tssr63032	transcription start site region 63032	116 bp upstream
Tssr63033	transcription start site region 63033	102 bp upstream
Tssr63034	transcription start site region 63034	76 bp upstream
Tssr63035	transcription start site region 63035	61 bp upstream
Tssr63036	transcription start site region 63036	within coordinates
Tssr63037	transcription start site region 63037	11 bp downstream
Tssr63038	transcription start site region 63038	48 bp downstream
Tssr63039	transcription start site region 63039	107 bp downstream
Tssr63040	transcription start site region 63040	165 bp downstream
Tssr63041	transcription start site region 63041	214 bp downstream
Tssr63042	transcription start site region 63042	239 bp downstream
Tssr63043	transcription start site region 63043	249 bp downstream
Tssr63044	transcription start site region 63044	271 bp downstream
Tssr63045	transcription start site region 63045	362 bp downstream
Tssr63046	transcription start site region 63046	381 bp downstream
Tssr63047	transcription start site region 63047	404 bp downstream
Tssr63048	transcription start site region 63048	432 bp downstream
Tssr63049	transcription start site region 63049	447 bp downstream
Tssr63050	transcription start site region 63050	471 bp downstream
Tssr63051	transcription start site region 63051	523 bp downstream