rs250632723 SNP Detail

Summary

• ID
  rs250632723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128514085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGATTAG CAGCTGTAAG
  AGAGGACAGG CCCATGAGTG ACAGAGCCCT GGAGGAGCAT TGAAGAGCTG CAACATAGAA
  CCGGTGTCTA AATATCTGCA CCTCTCCAAC TTCATGGCGC TGATCTTGCC TCAAGAGGCC
  CCCAAATCAG AGTGGGGAAC CCCGTGTGTA AATCAATTCT GGCAGGGCAA AATGGGGGTG
  Y
  GGGTGGGGGT GACAACAGAG ATGCTGGCAA CAGAGGATTA GAAATTACAT GTTGTTCATA
  ATCCCTGTGC CCAGGCAGGG GGATCACAAT TATGAGGTCA GCTTGTACTA CATTGTGAGT
  TTCAGGTTCG ACTGAGCTAA ATATAAAGAC CCTGACTGAG ATGGTCTGAG AGAGGGTGAT
  GAGTGGAAGG AAGGAGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321305871	CHEV_4_128297536	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250632723					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128514085 () rs orientation: forward

Symbol	Name	Function Class
Rr599982	regulatory region 599982	1358 bp distal
Rr599983	regulatory region 599983	979 bp distal
Tlr12	toll-like receptor 12	1673 bp upstream
Tssr43437	transcription start site region 43437	1965 bp upstream
Tssr43438	transcription start site region 43438	1695 bp upstream
Tssr43439	transcription start site region 43439	1667 bp upstream
Tssr43440	transcription start site region 43440	1646 bp upstream