rs250634051 SNP Detail

Summary

• ID
  rs250634051
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86232159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGAGTCTC CCAGTGTGAG CTAAGGAGGG
  AAGGTTCTTG GGGAAGGGGG CACAGGCAGG ATCATTCCTG AGAAGAGCTA GGATTTCTGC
  CTCTGAAAAG GGTGTGCTGG GCTTACTTGA CCAGGTAGGG GCCCCGGAAA GTGGGTTTTC
  R
  TCCCCAGGAC TGAAGGGCTA GGCACCTCAT TGCTTTGTGT AGAATATAAA GGTAAGGATA
  AGGAGTCGTG ATGGGATCTG TCCACTTCCC TTCGAGACTT CCCAATTAGA GCAAGAAAGG
  CTCGCTTCTG TTGAGTCAGT GGGGGCTGCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319828018	CHEV_1_88201012	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250634051					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86232159 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	within coordinates
Cpgi501	CpG island 501	259 bp distal
Gm28626	predicted gene 28626	377 bp upstream
Rr366828	regulatory region 366828	1439 bp upstream
Rr414517	regulatory region 414517	1193 bp distal
Rr414518	regulatory region 414518	290 bp distal
Rr414519	regulatory region 414519	63 bp distal
Tssr7735	transcription start site region 7735	1198 bp downstream
Tssr7736	transcription start site region 7736	991 bp downstream
Tssr7737	transcription start site region 7737	955 bp downstream
Tssr7738	transcription start site region 7738	934 bp downstream