rs250637136 SNP Detail

Summary

• ID
  rs250637136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115105602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGGTGCG GTAGTAAACA
  TGCCGAGATA ACATGGACCT CGAGAGCACT GTGCAGACAT AGATGAAGCC ATCACACACA
  TCCAAGTCTG GTCTTACTAC TTAAGGATGT CCCTTTGCTT CACTGAGCCT TCCTCTGCTC
  ATTTGTAAAA TGGGACCATT CAAATGTGAT CCTGCTTAGC TGTGTGCCAT GCTCTTGAAC
  Y
  TGTGGCTGAG TGCTGTCTTC ACCATTCTGC AGAAGAAACT GGGACTCAGG GACAGTGCCC
  ACCTAACTGG CTGCAAAGCT GGCGTGGGAA CCAAGGCAAG CCACTGTCCG CTGAAGCATC
  CTGCCTGCCA CCTGGCTGCT GAGTTCCTGG CTGGGAGAAC CCTGAGGCTG CTTGGCTGGG
  GCTGAGGGCA TCAGGAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366346672	MGP_WTSI_5_115417552	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250637136					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366346672	MGP_WTSI_5_115417552	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115105602 () rs orientation: forward

Symbol	Name	Function Class
Gm71622	predicted gene, 71622	within coordinates
Hnf1a	HNF1 homeobox A	within coordinates
Hnf1aos1	HNF1 homeobox A, opposite strand 1	1200 bp upstream
Hnf1aos2	HNF1 homeobox A, opposite strand 2	1280 bp upstream
Rr124128	regulatory region 124128	398 bp proximal
Rr618076	regulatory region 618076	1513 bp distal
Rr618077	regulatory region 618077	1977 bp distal
Rr618078	regulatory region 618078	935 bp distal
Rr618079	regulatory region 618079	799 bp distal
Rr618080	regulatory region 618080	9 bp proximal
Rr618081	regulatory region 618081	790 bp proximal
Rr618082	regulatory region 618082	1858 bp proximal
Tssr48194	transcription start site region 48194	1216 bp upstream
Tssr48195	transcription start site region 48195	1246 bp upstream
Tssr48196	transcription start site region 48196	1285 bp upstream