rs250647590 SNP Detail

Summary

• ID
  rs250647590
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136192102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGCTCA GAGCAAAGGC
  CTGGGCACCA TCACCCTAGT TTAGTGTCAA GCATGAAACC AAGGCCTTTA TTATGCTAGG
  TGGACAGCTA CATCGCCAGC ATCTGTATTG TTTTGTTTGT TTAAAAAAAA AAAAGAAAAA
  CCTTAGAACT GTGTGCATGT GTGTGTTTGT GTCCTGATTC GTGTGTGTAC ACGTGAATAT
  R
  TTTGGTACAT GGGCAGACAA AAGCCAGAGG CGGATACTGT ATCTTTCTCA ATCAGACTCC
  GATTGATAAC TGAGAAAGGA TTACCCCTTG AATCCTGACT TCGACAACTT GGCTAAACTG
  GCTCTCTGTC CAGTCCCAGG GGTCCTCCTG CTTCCACCTC CTGAGCACAG GGGTTACAGA
  TGCACAGCTG TTCACGGACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366851431	MGP_WTSI_5_136639118	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250647590					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366851431	MGP_WTSI_5_136639118	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136192102 () rs orientation: forward

Symbol	Name	Function Class
D5Mit341	DNA segment, Chr 5, Massachusetts Institute of Technology 341	1328 bp distal
Orai2	ORAI calcium release-activated calcium modulator 2	within coordinates
Rr622551	regulatory region 622551	658 bp proximal
Tssr53795	transcription start site region 53795	1967 bp upstream
Tssr53796	transcription start site region 53796	1938 bp upstream
Tssr53797	transcription start site region 53797	1888 bp upstream
Tssr53798	transcription start site region 53798	1856 bp upstream
Tssr53799	transcription start site region 53799	1841 bp upstream
Tssr53800	transcription start site region 53800	1787 bp upstream
Tssr53801	transcription start site region 53801	1215 bp upstream
Tssr53802	transcription start site region 53802	1177 bp upstream
Tssr53803	transcription start site region 53803	1794 bp downstream
Tssr53804	transcription start site region 53804	1841 bp downstream
Tssr53805	transcription start site region 53805	1979 bp downstream
Tssr53806	transcription start site region 53806	1994 bp downstream