rs250653271 SNP Detail

Summary

• ID
  rs250653271
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119068549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCCGAGC TGCCGTCCGC
  ACCCGCTGAG CTTCCCGGGG GAGCCGCCTG CTTGAGCCGC TTTACCAGCG GGGTGCCGTC
  CTTTGTGCTG GACACCGAAG CCTCAGTCAG CAACGGGGCC ACCTTCCTGG GTTCCCCGAC
  GGCGCGCCGC GGCTGGGACT GCGTGCGCTC CTGCTGCACC ACTCAGAACT GCAACCTGGC
  S
  CTGGTGGAGC TGCAGCCAGA CGGCGGCGAG GACGCCATCT CTGCCTGCTT CCTCATGAAC
  TGCCTGTACG AGCAGAACTT CGTGTGCAAG TTCGCTCCGA AGGAGGGCTT CATCAACTAT
  CTTACTCAGG AGCTTTACCG CTCCTACCGC GAGCTGCGGA CTCGAGGCTT TGGAGGTGAG
  GAAAGTTGCT GGCCAGAAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355426202	MGP_WTSI_2_119063804	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250653271					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355426202	MGP_WTSI_2_119063804	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119068549 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	793 bp upstream
Cpgi12109	CpG island 12109	within coordinates
Rr563445	regulatory region 563445	804 bp distal
Rr563446	regulatory region 563446	992 bp distal
Rr563447	regulatory region 563447	505 bp distal
Rr563448	regulatory region 563448	668 bp distal
Rr563449	regulatory region 563449	426 bp distal
Rr563450	regulatory region 563450	9 bp proximal
Rr563451	regulatory region 563451	1324 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	Coding-Synonymous
Tssr19609	transcription start site region 19609	851 bp downstream
Tssr19610	transcription start site region 19610	694 bp downstream
Tssr19611	transcription start site region 19611	648 bp downstream
Tssr19612	transcription start site region 19612	594 bp downstream
Tssr19613	transcription start site region 19613	560 bp downstream
Tssr19614	transcription start site region 19614	544 bp downstream
Tssr19615	transcription start site region 19615	516 bp downstream
Tssr19616	transcription start site region 19616	423 bp downstream
Tssr19617	transcription start site region 19617	419 bp downstream
Tssr19618	transcription start site region 19618	358 bp downstream
Tssr19619	transcription start site region 19619	328 bp downstream