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rs250657976 SNP Detail
Summary
  • ID
    rs250657976
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:54799586 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGAACTTGGG CCATTTGGCT
TGGTCATTCT GGGCTTCCCT TCCAACCAAT TTGGCAAACA GGAGCCAGGC GAGAACTCGG
AGATACTCCC CAGTCTCAAG TGAGTTCTCA TGGCTGGAGA CGGCAGCCTC TATGGGGCAG
AGGCTCAGGG GCTGCAGATA TTGGTTGACG GTCTCCACGT CAGCCACTCA GTTACTCCCG
Y
TCCCCCATCC TCACCCCAGT TTGGGGTTTA ATGGAATGAG GGGGAGGGTA CAGGAAATAG
GAGGCTGTGG GTAACTGTCT GGGCAGCACA TTGAAGGGTA GAGATGTGGG GTGGGTATAG
AGAGGGGCTG AGATGGCAGA TACACACTGG GCCTATGTAT GTCCATGCAA GTCGTGCGCT
TGATAAAGGA GATTCCCAGC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss383428899 MGP_WTSI_11_54722262 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250657976 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss383428899 MGP_WTSI_11_54722262 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:54799586 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gpx3 glutathione peroxidase 3 within coordinates
Tssr3502 transcription start site region 3502 881 bp downstream
Tssr3503 transcription start site region 3503 1355 bp upstream
Tssr101553 transcription start site region 101553 1979 bp downstream
Tssr101554 transcription start site region 101554 1967 bp downstream
Tssr101555 transcription start site region 101555 1925 bp downstream
Tssr101556 transcription start site region 101556 1630 bp downstream
Tssr101557 transcription start site region 101557 1600 bp downstream
Tssr101558 transcription start site region 101558 1583 bp downstream
Tssr101559 transcription start site region 101559 1560 bp downstream
Tssr101560 transcription start site region 101560 1514 bp downstream
Tssr101561 transcription start site region 101561 203 bp downstream
Tssr101562 transcription start site region 101562 156 bp downstream
Tssr101563 transcription start site region 101563 144 bp downstream
Tssr101564 transcription start site region 101564 123 bp downstream
Tssr101565 transcription start site region 101565 292 bp upstream
Tssr101566 transcription start site region 101566 342 bp upstream
Tssr101567 transcription start site region 101567 703 bp upstream
Tssr101568 transcription start site region 101568 779 bp upstream
Tssr101569 transcription start site region 101569 862 bp upstream
Tssr101570 transcription start site region 101570 884 bp upstream
Tssr101571 transcription start site region 101571 938 bp upstream
Tssr101572 transcription start site region 101572 1033 bp upstream
Tssr101573 transcription start site region 101573 1070 bp upstream
Tssr101574 transcription start site region 101574 1084 bp upstream
Tssr101575 transcription start site region 101575 1132 bp upstream
Tssr101576 transcription start site region 101576 1146 bp upstream
Tssr101577 transcription start site region 101577 1175 bp upstream
Tssr101578 transcription start site region 101578 1258 bp upstream
Tssr108006 transcription start site region 108006 1475 bp upstream
Tssr108007 transcription start site region 108007 186 bp upstream
Tssr108008 transcription start site region 108008 125 bp upstream
Tssr108009 transcription start site region 108009 109 bp upstream
Tssr108010 transcription start site region 108010 301 bp downstream
Tssr108011 transcription start site region 108011 897 bp downstream
Tssr108012 transcription start site region 108012 931 bp downstream
Tssr108013 transcription start site region 108013 1025 bp downstream
Tssr108014 transcription start site region 108014 1032 bp downstream
Tssr108015 transcription start site region 108015 1115 bp downstream
Tssr108016 transcription start site region 108016 1167 bp downstream
Tssr108017 transcription start site region 108017 1218 bp downstream
Tssr108018 transcription start site region 108018 1233 bp downstream
Tssr108019 transcription start site region 108019 1269 bp downstream
Tssr108020 transcription start site region 108020 1325 bp downstream
Tssr108021 transcription start site region 108021 1345 bp downstream
Tssr108022 transcription start site region 108022 1356 bp downstream
Tssr108023 transcription start site region 108023 1609 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory