rs250662604 SNP Detail

Summary

• ID
  rs250662604
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:84567283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAAATTT GATGTTTGCT
  TTCACTGAAA TATCTCATGC TTCTCTGATT TTGATGCCTG ATATTCCTTT CCGTAGAAGT
  TTCCTCTACT CACACATTAG ATTTCCTCAC TCTACAGTGC ATTGCTCCAC AGCTAGTACT
  GATGCTCAGA TATTCAGGCC TAAGGTTTTT CTGACAAGAT ACCGGGGGGT GGTGGGGGGG
  T
  GGTGGGGGGG GGTTGTTTCT TGAAGGATCC ACAGCTTGGA GTTTCTATCA AACAATACAA
  TATCAACATT TTCCAAATGT AAAACTAAAG ATATTTGTCT AAGTACATAC ACAGATTATA
  ATACATAACA TATACATTTA TATATGTAAT AACGAAACAA ATATAGTCTA AACCAAGCAT
  TCCCAAGAAT TTTTTGGACA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	I/LnJ	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
ss365712118	MGP_WTSI_5_84848449	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	I/LnJ	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
rs250662604					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365712118	MGP_WTSI_5_84848449	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:84567283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16023	CpG island 16023	1585 bp distal
Gm42163	predicted gene, 42163	within coordinates
Gm71976	predicted gene, 71976	within coordinates
Tssr51513	transcription start site region 51513	1935 bp upstream