rs250664050 SNP Detail

Summary

• ID
  rs250664050
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84510604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAAGGAA TCACTGGAGG
  ACAACAGGAG CATTTTCAGA TACCTTTCAG GGCAGACCTG CCCTGGCTGT ACCCCCTATC
  TTGAAGAAAA AGAAAAACGA ATAAGGTGAA AATCGCAACT ACTATTTATA GAATCAAAAT
  GGGTTCATCC ATTGAGTTTT AACTTTCAAA AATCATAAAG TACCATCCTA AATATCTGAG
  W
  TTTCTTGAAT TGCCTAGTGA CCTGTGGGAT GTACGTCAGA ATATTACCCA GAACTGAAGT
  TGTGTCCTTT GAACTTCAGC ATTGTAGAAC TATGAACCGT GGCTGTGTTA AAAATGATAC
  ATGTATTCAA ATATTTCCAC AGAATTTAAA GTTTGATTTT ATAATTAGTT TTTAAATTGC
  AAACCTTACA AAAATTTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261445	CHEV_16_84713961	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250664050					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84510604 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	424 bp upstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	381 bp downstream
Rr518521	regulatory region 518521	69 bp distal
Rr518522	regulatory region 518522	33 bp proximal
Tssr139172	transcription start site region 139172	1856 bp downstream
Tssr139173	transcription start site region 139173	486 bp upstream
Tssr139174	transcription start site region 139174	1269 bp upstream
Tssr139175	transcription start site region 139175	1357 bp upstream
Tssr139176	transcription start site region 139176	1893 bp upstream