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rs250665775 SNP Detail
Summary
  • ID
    rs250665775
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr1:87055045 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTCGGTAGG TTCGGGAACA
GTGGCAGGCT GTCAATTACG TACAGAATAC TTCTGAGCCA TCGTTTTCTC TGTCTGTAAA
ATGGACAGAA ATGGGCACCT GCCTTGTGGG GATCTAGCAA CGACTGAACC ACTGGCCAGG
CAAAAGGCGG GGGCTCGTCT AAGCATCATT CCTTGGCAGG AAAACGTGTC CCTCTTCCCC
M
ATGCAGGGCT GGCTCCCCTC AATGCTCTGG ACGGCAAGCC CTACACCTCC ATCCTGTATG
GCAACGGCCC AGGCTATGTC GGTACAGGGG AAAGACCCAA CGTCACCGCC GCTGAAAGCA
GTGAGTGCGG TGGGGTGGCT TGCCTGAAGG TCGGGTAGAG GTGACTCAGA TCAGAGATCC
TCTCCCTTAA CATCTTGTCC                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss350380328 MGP_WTSI_1_89023898 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250665775 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss350380328 MGP_WTSI_1_89023898 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:87055045 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Akp3 alkaline phosphatase 3, intestine, not Mn requiring within coordinates
Cpgi518 CpG island 518 within coordinates
Rr17963 regulatory region 17963 245 bp distal
Tssr145 transcription start site region 145 971 bp downstream
Tssr146 transcription start site region 146 265 bp upstream
Tssr147 transcription start site region 147 617 bp downstream
Tssr148 transcription start site region 148 1279 bp upstream
Tssr7782 transcription start site region 7782 1920 bp downstream
Tssr7783 transcription start site region 7783 1627 bp downstream
Tssr7784 transcription start site region 7784 1385 bp downstream
Tssr7785 transcription start site region 7785 1346 bp downstream
Tssr7786 transcription start site region 7786 1319 bp downstream
Tssr7787 transcription start site region 7787 990 bp downstream
Tssr7788 transcription start site region 7788 592 bp downstream
Tssr7789 transcription start site region 7789 558 bp downstream
Tssr7790 transcription start site region 7790 505 bp downstream
Tssr7791 transcription start site region 7791 378 bp downstream
Tssr7792 transcription start site region 7792 352 bp downstream
Tssr7793 transcription start site region 7793 341 bp downstream
Tssr7794 transcription start site region 7794 328 bp downstream
Tssr7795 transcription start site region 7795 296 bp downstream
Tssr7796 transcription start site region 7796 273 bp downstream
Tssr7797 transcription start site region 7797 260 bp downstream
Tssr7798 transcription start site region 7798 222 bp downstream
Tssr7799 transcription start site region 7799 7 bp upstream
Tssr7800 transcription start site region 7800 26 bp upstream
Tssr7801 transcription start site region 7801 85 bp upstream
Tssr7802 transcription start site region 7802 212 bp upstream
Tssr7803 transcription start site region 7803 273 bp upstream
Tssr7804 transcription start site region 7804 297 bp upstream
Tssr7805 transcription start site region 7805 371 bp upstream
Tssr7806 transcription start site region 7806 385 bp upstream
Tssr7807 transcription start site region 7807 405 bp upstream
Tssr7808 transcription start site region 7808 510 bp upstream
Tssr7809 transcription start site region 7809 580 bp upstream
Tssr7810 transcription start site region 7810 605 bp upstream
Tssr7811 transcription start site region 7811 634 bp upstream
Tssr7812 transcription start site region 7812 684 bp upstream
Tssr7813 transcription start site region 7813 725 bp upstream
Tssr7814 transcription start site region 7814 755 bp upstream
Tssr7815 transcription start site region 7815 823 bp upstream
Tssr7816 transcription start site region 7816 863 bp upstream
Tssr7817 transcription start site region 7817 875 bp upstream
Tssr7818 transcription start site region 7818 1050 bp upstream
Tssr7819 transcription start site region 7819 1366 bp upstream
Tssr12838 transcription start site region 12838 1593 bp upstream
Tssr12839 transcription start site region 12839 1583 bp upstream
Tssr12840 transcription start site region 12840 1574 bp upstream
Tssr12841 transcription start site region 12841 515 bp upstream
Tssr12842 transcription start site region 12842 195 bp upstream
Tssr12843 transcription start site region 12843 63 bp downstream
Tssr12844 transcription start site region 12844 254 bp downstream
Tssr12845 transcription start site region 12845 425 bp downstream
Tssr12846 transcription start site region 12846 486 bp downstream
Tssr12847 transcription start site region 12847 957 bp downstream
Tssr12848 transcription start site region 12848 1026 bp downstream
Tssr12849 transcription start site region 12849 1045 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory