rs250666890 SNP Detail

Summary

• ID
  rs250666890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82223650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCACCTGA AACCTTGCTC
  TTAACCACTC GAAAACGGTA GTGAAAGAGG CTGGGTGGGG TTTCAGCTCT CGAAAGGTCA
  GGAGGCTGCC CCCTCCACCT GACACCCAAG GGGTTGTTCG CCCACCCACT CCCCAAATGT
  ATTTATTCAT TACTTATTCA TATGTTAAAC ACAGGCTAGG TGCCAACCAC TATTTCTGGA
  Y
  GCCTTTACAC CGATGATGAT CATAGCTGTC CCCTCTCCGA ATCTGTGCCA TTTTCCTCCT
  ATCAGGTAAT GGCAAACCGA CTTCTCTGCC AATCTTTTCT CTCAGCCTTT ACATGCAATT
  GTCCAAAAAT TGATTCCTGC CTTTAAATTC CACCTCTCAT CCCACCCAGT AACGCTGGCC
  TCATTACATA TTGCCTGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394739007	MGP_WTSI_15_82169879	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250666890					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394739007	MGP_WTSI_15_82169879	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82223650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	118 bp distal
Cpgi7420	CpG island 7420	1292 bp proximal
Naga	N-acetyl galactosaminidase, alpha	667 bp upstream
Pheta2	PH domain containing endocytic trafficking adaptor 2	within coordinates
Rr506479	regulatory region 506479	480 bp distal
Rr506480	regulatory region 506480	82 bp distal
Rr506481	regulatory region 506481	324 bp distal
Rr506482	regulatory region 506482	919 bp proximal
Rr506483	regulatory region 506483	1741 bp proximal
Tssr4669	transcription start site region 4669	574 bp upstream
Tssr132381	transcription start site region 132381	1750 bp upstream
Tssr135543	transcription start site region 135543	658 bp upstream
Tssr135544	transcription start site region 135544	595 bp upstream
Tssr135545	transcription start site region 135545	585 bp upstream