rs250668316 SNP Detail

Summary

• ID
  rs250668316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112791501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTCAGT CCAAAGCTAA
  GTCAAGGCAC AATGGTGCCC TCCAATTTTC CCCACCCAAG CACTGGCTGA ACAACAAGAG
  CCAGGCATTC TGGGGGCTCA GATAGTGTTG AGGCCGGTGG ACAGTAAAGT GGAAGTGAGT
  GCTAACTACC CTACAACAAC CTGAGGTAAA GAGACGGCCC AGGACTCCAC AACCATCATA
  Y
  CTTGGAGCCG TCCTACCTCA GTGACCATGT GGGAGCAGCT TCCTGGGCTC TGACCATCCA
  CTAGAGTCTT GGTTTTACCT GTGCAGATCT ATGACAACCC AGGCTTGGAT TGTAACCGCA
  AGCAAGCATT CATCTGGATG TTGGATTTTT TTAAGGAGAA CCACAAGTTA ATGGTTTCCA
  AGTTGGGCAT GGTGGCAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324171466	CHEV_12_114066092	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250668316					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112791501 () rs orientation: forward

Symbol	Name	Function Class
Cdca4	cell division cycle associated 4	within coordinates
Cpgi5185	CpG island 5185	792 bp proximal
Gm52009	predicted gene, 52009	189 bp upstream
Gm56552	predicted gene, 56552	1704 bp upstream
Rr265126	regulatory region 265126	within coordinates
Rr387795	regulatory region 387795	954 bp upstream
Tssr3960	transcription start site region 3960	1575 bp downstream
Tssr115439	transcription start site region 115439	1267 bp upstream
Tssr115440	transcription start site region 115440	1779 bp upstream
Tssr117911	transcription start site region 117911	1144 bp downstream
Tssr117912	transcription start site region 117912	1470 bp downstream
Tssr117913	transcription start site region 117913	1605 bp downstream