rs250679391 SNP Detail

Summary

• ID
  rs250679391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84392542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACTGGGG TCTCGCATGT
  CTGCTGGGAG CAGCTGGGAC CATGTGTAGT GGGTGGTTGG TAGCCAGGTT GAACCAGAGC
  TGTGATTATT GTGGGTAAGC CTTGGGTGCA GTGAGTTTCA GGGAGCTGTG TTCAGTGTGT
  GCATGGGTCT CTGGTGTATT CTTTCTTTTT TTTGGGGGGG GGGATTCAGG ATAAACAGGC
  Y
  TTAGAGATGT GATTATGTGT CTCAGGACAA GTTCTCGGGG TCCATGGGCA TTGGTTTAAG
  GGAGACTACA TCAGGAGGTG TGCTCTGGGG CTGGGAACAG ACTTACAGTG ACAGTGAGAT
  TTACACCCAG TGCTGAGGTA AGCATCAGTT TCATATGGGG GAGGGGGGAT AGATGTTACA
  GTCAGCAATG GTGAGTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375383136	MGP_WTSI_8_86189812	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250679391					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375383136	MGP_WTSI_8_86189812	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84392542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	1786 bp proximal
Gipc1	GIPC PDZ domain containing family, member 1	1219 bp downstream
Pkn1	protein kinase N1	623 bp downstream
Ptger1	prostaglandin E receptor 1 (subtype EP1)	765 bp upstream
Rr666278	regulatory region 666278	726 bp distal
Rr666279	regulatory region 666279	275 bp proximal
Rr666280	regulatory region 666280	776 bp proximal
Rr666281	regulatory region 666281	1940 bp proximal
Tssr78279	transcription start site region 78279	721 bp upstream
Tssr78280	transcription start site region 78280	794 bp upstream
Tssr78281	transcription start site region 78281	914 bp upstream