rs250679782 SNP Detail

Summary

• ID
  rs250679782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158223487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CAGCCTGGTC TACAGAGTGA GTCCAGGTCA GCCAGGACTA CACAGAGAAA
  Y
  CTTCTGTCTC AAATAAACAA AACAAAACAA AAAATAAATA ATTTAAAAAA           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320588872	CHEV_2_158207303	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250679782					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158223487 () rs orientation: forward

Symbol	Name	Function Class
Gm25129	predicted gene, 25129	1901 bp downstream
Rr397444	regulatory region 397444	1486 bp downstream
Rr568752	regulatory region 568752	1396 bp distal
Rr568753	regulatory region 568753	1640 bp distal
Rr568754	regulatory region 568754	1602 bp distal
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	169 bp downstream
Tssr21318	transcription start site region 21318	603 bp upstream
Tssr21319	transcription start site region 21319	1002 bp upstream
Tssr21320	transcription start site region 21320	1041 bp upstream
Tssr21321	transcription start site region 21321	1133 bp upstream
Tssr21322	transcription start site region 21322	1278 bp upstream
Tssr21323	transcription start site region 21323	1325 bp upstream
Tssr21324	transcription start site region 21324	1357 bp upstream
Tssr21325	transcription start site region 21325	1397 bp upstream
Tssr21326	transcription start site region 21326	1419 bp upstream
Tssr21327	transcription start site region 21327	1468 bp upstream
Tssr21328	transcription start site region 21328	1506 bp upstream
Tssr21329	transcription start site region 21329	1519 bp upstream
Tssr21330	transcription start site region 21330	1541 bp upstream
Tssr27228	transcription start site region 27228	1634 bp downstream