rs250684460 SNP Detail

Summary

• ID
  rs250684460
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126931519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATTTTTT ATTGTTGGTT
  TGGTTTGGTT TTGTGTAGAC ACAGTTTTTT TTCTGTGTAG CCCTGGCTTT CCTGAAACTC
  ACTCTGTAGA CCAGGCTGGC CTTGAACTCA GAGATCCACC TGCCTCTCCC TCCTGAGTGC
  TGGGGTTACA GGTGAGCCAC CATCCCACAG CTCTACAGGA GGTTTTTTTT TTTTTGTTTT
  K
  TTTTTTGTTT TTTGAGAGTA TCAGCATGTA GGCCAAATGG CTAAAACTCA AGATCCTCTG
  GCCTCTCCTG CTGAATGCTG AGATTATGAG CTCGGGCAAC TATGCCTGCC TGAAACATGG
  CATTCACATG AGTGGAAAGA ATAAATTATC AAACTTAAAG CTTTTTAAAA TATTCACAAG
  ATTTATAAAA CCATATTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
ss373085969	MGP_WTSI_7_134475861	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
rs250684460					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373085969	MGP_WTSI_7_134475861	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126931519 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	within coordinates
Tssr69200	transcription start site region 69200	7 bp upstream
Tssr69201	transcription start site region 69201	1223 bp upstream
Tssr69202	transcription start site region 69202	1255 bp upstream
Tssr69203	transcription start site region 69203	1303 bp upstream
Tssr69204	transcription start site region 69204	1434 bp upstream