rs250685650 SNP Detail

Summary

• ID
  rs250685650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73099994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATATGCGAA AGCCCACGTC CAGAGTCTGA
  CAGCTGGAAC TGCGTGGAAA ACAGCGGGAG GGGGAGGGGA CTGCTGCagg aggaggagga
  ggaggaggag gaggaggagg aggaggagga ggaggaggag gaggaggagg aggaggagga
  R
  gaATCCGGGT GCCTCGAGCC CGAGACGCCT GTGAGAACTG TTTAAATGGT GGGCTTAAAA
  ATGTTACCAG TGCCAAGTGG CTTTTCGGGT TGTCTTATTT ATGACTTGGT CAGGTTTCCT
  TAAGAAGAGG GTGGGTTGGG GAGGAGAAGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320344745	CHEV_2_73107707	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250685650					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73099994 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11766	CpG island 11766	931 bp proximal
Cpgi11767	CpG island 11767	1650 bp proximal
Gm75377	predicted gene, 75377	1058 bp upstream
Rr406543	regulatory region 406543	154 bp distal
Rr559114	regulatory region 559114	1114 bp distal
Rr559115	regulatory region 559115	613 bp distal
Rr559116	regulatory region 559116	388 bp proximal
Rr559117	regulatory region 559117	1033 bp proximal
Rr559118	regulatory region 559118	1785 bp proximal
Sp9	trans-acting transcription factor 9	Intron
Tssr18368	transcription start site region 18368	1645 bp downstream