rs250686355 SNP Detail

Summary

• ID
  rs250686355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55206647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCTGGCT TGTCCTTGCT
  TCCATGTCTT GCCCCGGGGT CCTTCTTCTA CTCTCTCCAG CTTCCCTTCT CCCTGTCTTT
  CATGATTTAC ATCTAAAGGT AGCCTGGGTT CTTCCCTTTA TGGTATCGTT TCCAGCGCTT
  CCAGATTCTC TGTTCCAGGC TCCTTCTCAC CTTCTCTCTC CCCCCCAGAC TCCCCCCACC
  Y
  CCCGCCCATT CTGAGCATCA TCCTTATCTT GAGGCTCTAC CACCAGTCCT CGACCCTCTG
  TGTGCACAGC CTGGCCACCT TTGAAGCACC TTTATCTCTT GCTCTTTTAG GCTCTGGCTC
  TTAGGTTCCC TGGACTTCTC CACACATCTC CTTCATCCAG TGTGATCCTC CCTACGGGTC
  TCTTCGCTGC AGCTCAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J
ss391147619	MGP_WTSI_14_55588027	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	C	T	T	T	T	T	T	T	C	T	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J
rs250686355					SNP	C	C	T	C	C	T	T	T	T	T	T	T	C	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391147619	MGP_WTSI_14_55588027	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55206647 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	within coordinates
Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	1494 bp downstream
Rr407057	regulatory region 407057	1407 bp distal
Rr492380	regulatory region 492380	385 bp distal
Rr492381	regulatory region 492381	471 bp proximal
Tssr125718	transcription start site region 125718	507 bp downstream
Tssr125719	transcription start site region 125719	415 bp downstream
Tssr125720	transcription start site region 125720	390 bp downstream
Tssr125721	transcription start site region 125721	378 bp downstream
Tssr125722	transcription start site region 125722	36 bp upstream
Tssr125723	transcription start site region 125723	105 bp upstream
Tssr125724	transcription start site region 125724	117 bp upstream
Tssr125725	transcription start site region 125725	977 bp upstream
Tssr125726	transcription start site region 125726	1002 bp upstream
Tssr125727	transcription start site region 125727	1035 bp upstream
Tssr125728	transcription start site region 125728	1843 bp upstream
Tssr128745	transcription start site region 128745	1968 bp upstream
Tssr128746	transcription start site region 128746	1215 bp upstream
Tssr128747	transcription start site region 128747	1191 bp upstream
Tssr128748	transcription start site region 128748	1147 bp upstream
Tssr128749	transcription start site region 128749	1116 bp upstream
Tssr128750	transcription start site region 128750	1094 bp upstream
Tssr128751	transcription start site region 128751	1088 bp upstream
Tssr128752	transcription start site region 128752	1029 bp upstream
Tssr128753	transcription start site region 128753	830 bp upstream
Tssr128754	transcription start site region 128754	760 bp upstream
Tssr128755	transcription start site region 128755	1525 bp downstream
Tssr128756	transcription start site region 128756	1542 bp downstream