rs250689938 SNP Detail

Summary

• ID
  rs250689938
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115047898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    caaatgtaa ttaaaccttc cctggtttac
  cctctgaaaa cctgctatcc catcctccct cctctgctgc tatgagggtg ttcccttcac
  ccacccaccc actcctgcct cccggccccg gccccggcat tcccctattt ttttggtttt
  S
  gttttcgttt tggttttggt tttggtttat ttaatttttt ttttaatttt TTGttttttt
  tttttaagac agggtttctt tgcatagtcc tggaactcac tctgtagacc aggctggcct
  caatcccaaa acctgtacct gccagccccc                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321653759	CHEV_5_115359846	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250689938					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115047898 () rs orientation: forward

Symbol	Name	Function Class
Oasl2	2'-5' oligoadenylate synthetase-like 2	within coordinates
Rr618060	regulatory region 618060	636 bp proximal
Tssr48138	transcription start site region 48138	60 bp upstream
Tssr48139	transcription start site region 48139	1174 bp upstream
Tssr48140	transcription start site region 48140	1208 bp upstream
Tssr48141	transcription start site region 48141	1417 bp upstream
Tssr48142	transcription start site region 48142	1516 bp upstream
Tssr48143	transcription start site region 48143	1545 bp upstream
Tssr48144	transcription start site region 48144	1598 bp upstream
Tssr48145	transcription start site region 48145	1654 bp upstream
Tssr48146	transcription start site region 48146	1703 bp upstream
Tssr48147	transcription start site region 48147	1745 bp upstream
Tssr48148	transcription start site region 48148	1807 bp upstream
Tssr48149	transcription start site region 48149	1834 bp upstream
Tssr48150	transcription start site region 48150	1845 bp upstream
Tssr48151	transcription start site region 48151	1863 bp upstream
Tssr48152	transcription start site region 48152	1945 bp upstream
Tssr52739	transcription start site region 52739	1149 bp downstream