rs250696582 SNP Detail

Summary

• ID
  rs250696582
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80699746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC TCCCCCTCCT CCTTCCCCCT
  C
  CCCCTCCTCC TCCCCCTCCC AAGTG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323762496	CHEV_11_80622422	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250696582					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80699746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3390	CpG island 3390	1083 bp proximal
Rr236899	regulatory region 236899	within coordinates
Rr247320	regulatory region 247320	854 bp proximal
Tmem98	transmembrane protein 98	1446 bp upstream
Tssr103551	transcription start site region 103551	1437 bp upstream