rs250710748 SNP Detail

Summary

• ID
  rs250710748
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:85273820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    accagatga gatatccatc ctcatggact
  gaagaattgc tggatcttgg actttccttt catatgcaac cattgttgaa ttatgtgacc
  cacaatctgt agatcattct aataaatctc ccttttatat attcagagag attcattctg
  W
  aagttttgtt actttagaga aaatcttact aatacaGAGG TTATATAAAA GAAAGTGCCA
  ACTTAATATA CATCATACTT CTTTCAATTC ACTTTTAAAA TAAATTTTAT TGTGAAGTAT
  ACTTgcacac acttttaatc ctaatgcttg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324460050	CHEV_13_85265306	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250710748					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:85273820 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5915	CpG island 5915	998 bp proximal
Gm4076	predicted gene 4076	849 bp downstream
Rr388812	regulatory region 388812	1312 bp upstream
Rr483357	regulatory region 483357	812 bp proximal
Tssr4134	transcription start site region 4134	1147 bp upstream
Tssr120547	transcription start site region 120547	863 bp upstream
Tssr120548	transcription start site region 120548	989 bp upstream
Tssr120549	transcription start site region 120549	1034 bp upstream
Tssr123349	transcription start site region 123349	929 bp downstream
Tssr123350	transcription start site region 123350	1285 bp downstream
Tssr123351	transcription start site region 123351	1386 bp downstream
Tssr123352	transcription start site region 123352	1692 bp downstream