rs250715833 SNP Detail

Summary

• ID
  rs250715833
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:20189817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATTCATA CCCAACATAT
  TTTAAGTTTA TCTAGTTAAA GTGAGGACCT GTACTTTCTA CCTTTAAATT TAAAGTTTTC
  TATTAGAATT GAAAAGGAGA AAAATTGAAA GGGAAAAAAA ACCTGTTAGT CACTTCAGAC
  TCACATCCTG TTGGTACAGC ATATATATTT TTGTATTAAA AGGGAATCGT AGAACAAAAT
  K
  TCTTGTCCTC ACTATGAGCT TGTATTCTAG ATTAGCCCTA ACTGGGATAG TTGGTACTGT
  TACGCAATAA AGGACCTTTA AAGACTTACC AGTTTGCATT TTTTGTGTGA TTCTAACCAA
  ATTCAGGGTA GTGTGCTGGG AAGGATGTCT CTAAAGTCGT TTTTAGTAAA CAGCTGAGAT
  TTCCAGTGTT GGAATAACAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379649415	MGP_WTSI_10_20033877	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250715833					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379649415	MGP_WTSI_10_20033877	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:20189817 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4933406P04Rik	RIKEN cDNA 4933406P04 gene			1222 bp upstream
Bclaf1	BCL2-associated transcription factor 1			Intron
				Noncoding-Transcript-Variant
Cpgi1349	CpG island 1349			744 bp distal
D10Csu2	DNA segment, Chr 10, Central Connecticut State University 2			1901 bp distal
Gm67769	predicted gene, 67769			within coordinates
Rr428530	regulatory region 428530			1524 bp distal
Rr428532	regulatory region 428532			1233 bp distal
Rr428533	regulatory region 428533			732 bp distal
Rr428534	regulatory region 428534			900 bp proximal
Rr428535	regulatory region 428535			1089 bp proximal
Tssr92593	transcription start site region 92593			1671 bp downstream
Tssr92594	transcription start site region 92594			1579 bp downstream
Tssr92595	transcription start site region 92595			1553 bp downstream
Tssr92596	transcription start site region 92596			1532 bp downstream
Tssr92597	transcription start site region 92597			1095 bp downstream
Tssr96944	transcription start site region 96944			1793 bp upstream