rs250717315 SNP Detail

Summary

• ID
  rs250717315
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25690438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTC TGAAGCTTCT CACCAGGACC
  K
  TTTTTTTTTT TTTTTTTTTT TTTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PL/J	PWK/PhJ	RIIIS/J	SEA/GnJ	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss641701793	FVB_NJ_8_26310894	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PL/J	PWK/PhJ	RIIIS/J	SEA/GnJ	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250717315					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss641701793	FVB_NJ_8_26310894	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25690438 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20180	CpG island 20180	133 bp proximal
Rr661072	regulatory region 661072	1467 bp distal
Rr661073	regulatory region 661073	1017 bp proximal
Tacc1	transforming, acidic coiled-coil containing protein 1	within coordinates
Tssr76673	transcription start site region 76673	1566 bp downstream
Tssr76674	transcription start site region 76674	36 bp upstream
Tssr76675	transcription start site region 76675	1032 bp upstream
Tssr80693	transcription start site region 80693	893 bp downstream
Tssr80694	transcription start site region 80694	927 bp downstream
Tssr80695	transcription start site region 80695	1114 bp downstream
Tssr80696	transcription start site region 80696	1363 bp downstream