rs250728495 SNP Detail

Summary

• ID
  rs250728495
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90982256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGACGGTG ATTGAAAATT
  GGGCACCGGG GAGTTGGGGG ATTTTTGGTT GTTACAGCCT GTGTAGTTTA TAGTTTTGGG
  GTCTGGGAGT TCAGGCAGGA TCCATAACCC AAACTAGCCT TGCTCTCAGG ATTCTCATGT
  CTCAACCCTT CCACTATCGG GCTTACAAGC CTGCATCACC CACCCACCCC CCCCACCCCC
  S
  CGCGCCTTAT CCATGGCTGT GGTTGCTTAT TAGTGGGAAT ATTTCAAAGT AAATTGTACT
  CTGTGAAACC ATGTATTTTA TGGAGTTGAT ACCAGAGAGA GGGGGAGACC CAAGGTTCCC
  ATTTTAGCAG GCTTTTGTGA GACCTTGATA AAAACTGAGC CTCAGCCACT CATTCTCCAG
  GTAGGAGTTA ATCCTGTAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	DBA/2J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
ss350468188	MGP_WTSI_1_92951111	EVA_MGPV3	EVA_MGPV3	f	SNP	C	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	C	G	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	DBA/2J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
rs250728495					SNP	C	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	C	G	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350468188	MGP_WTSI_1_92951111	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90982256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	806 bp distal
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr29813	regulatory region 29813	within coordinates
Rr396168	regulatory region 396168	1472 bp downstream
Tssr8032	transcription start site region 8032	1342 bp downstream
Tssr8033	transcription start site region 8033	1014 bp downstream
Tssr8034	transcription start site region 8034	1002 bp downstream
Tssr8035	transcription start site region 8035	984 bp downstream
Tssr8036	transcription start site region 8036	972 bp downstream
Tssr8037	transcription start site region 8037	542 bp downstream
Tssr12924	transcription start site region 12924	1706 bp upstream
Tssr12925	transcription start site region 12925	1688 bp upstream
Tssr12926	transcription start site region 12926	1662 bp upstream
Tssr12927	transcription start site region 12927	1636 bp upstream
Tssr12928	transcription start site region 12928	1486 bp upstream
Tssr12929	transcription start site region 12929	684 bp upstream
Tssr12930	transcription start site region 12930	1958 bp downstream