rs250729454 SNP Detail

Summary

• ID
  rs250729454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48712751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTCCCGA GCACCGTACG
  GCGATCGTAC ATCTCATCTC TCTCTGGTAT ATTCTTCAGA CACTCCTTTT GAAGCACCGG
  AAGATAAACG TGCATTCTTT TCCACCATCA CCCCTCTGTT CTAGAAAGGA CAGCACACTG
  TAGATACGTC TTTACATCTT TCCTCTCAGG AACATACAAG ACAGGAACCC TGGTTTGTGT
  Y
  TTGAGGCAGA GTCTAAGTAG TTCAGGCTGC CCTCAAACGT GCCATGTTTT TGAACTCCAG
  ACCGCCTGCC TCTATGTTCT GAGAACCAGG GTTACAGGTG TGCACCACCA TGCCCAGCTA
  CAAATGCCTT TTTTATTAAA AACAAAAACA AAAACAAAAC ACAAACCAAA TTATCTTCCG
  ACACCAACAA CGGCATAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323664652	CHEV_11_48635426	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250729454					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48712751 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2780	CpG island 2780	172 bp distal
Gm74096	predicted gene, 74096	within coordinates
n-TGacc1	nuclear encoded tRNA glycine 1 (anticodon ACC)	1804 bp upstream
Rr446121	regulatory region 446121	1756 bp distal
Rr446122	regulatory region 446122	1444 bp proximal