rs250742598 SNP Detail

Summary

• ID
  rs250742598
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8762419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCCCCAA TCGCGCCATT
  CACCCGCGCC TTCCGCCACT GAAACTGCAG AAAGTTAATC TTTAAGCCGC TCGCTGAGTT
  CGAGTTTAAG AGGAGTCCGT ATGGTGACAA CCCCTGGAAT TACAGTCCTG TCTGTCAGGC
  TTCTTGGAAA ACAAAGTGTG ACAAAGCTCG CCTGGTCACG AGCCATTGTT TGGGTCGTAA
  K
  TCCGGGCGTT TCGGCTCCCG AGTGGCCGCA GTGCTGTGCA CTTCTAGGGT TTTCGGATAC
  TTAAATGAGA CCCTCTCTGA GCTGTAAGGG TGTGTTTTGT TTTGTTTTGT TTTGTTTTGT
  TTTGTTTTGT TTTGTTTTGT TTTGTTTTAC GTGGAAGAAA CAGGCAAGGG GTATGTTCAA
  AATAAAAGTT AATTTTATGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379374631	MGP_WTSI_10_8606473	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250742598					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379374631	MGP_WTSI_10_8606473	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8762419 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1286	CpG island 1286	within coordinates
Gm26674	predicted gene, 26674	within coordinates
Rr427412	regulatory region 427412	115 bp distal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr96654	transcription start site region 96654	977 bp upstream
Tssr96655	transcription start site region 96655	790 bp upstream
Tssr96656	transcription start site region 96656	728 bp upstream
Tssr96657	transcription start site region 96657	645 bp upstream
Tssr96658	transcription start site region 96658	599 bp upstream
Tssr96659	transcription start site region 96659	574 bp upstream
Tssr96660	transcription start site region 96660	550 bp upstream
Tssr96661	transcription start site region 96661	459 bp upstream
Tssr96662	transcription start site region 96662	430 bp upstream
Tssr96663	transcription start site region 96663	132 bp upstream
Tssr96664	transcription start site region 96664	63 bp upstream