About   Help   FAQ
rs250767197 SNP Detail
Summary
  • ID
    rs250767197
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr2:14078554 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCTCCCTCTG ATCTCAGGCT
    GGGGAATGAG CCAGCGTTAC CTCAGCCTCT CGAGAGGCTG TGCGCCTCGA CACTCCCTCC
    AAGGGATTCA GGCCAGCTCC ACCAGCTCAC ATGACTCCAA TCCCAGCAAC TTCCATGAAC
    CCTCGACGAG CGCGCTCAAC ATTTTCCTCG GGTAACCCAA AGGACTGCCT GACTTTCTAG
    M
    GGGATTGCAA CATCACAACA ACCCATCGAA TAAACCCAAG GAGTTAAAAA TTAAGGGTTT
    GGCTGGACCC AAACTGAACC CTCTCCCTCT CCCAGTCTCT TATTCACTCT AGAGGCTCTT
    AGTCGGCCTC GGTGCGCCTG AAGGACCTCG TCCTCCCGAG ACGCCCGGGG ACATGGAAAA
    GCCGAGAACC TAGCCGCTAA                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss353155392 MGP_WTSI_2_13995370 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250767197 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss353155392 MGP_WTSI_2_13995370 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:14078554 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11218 CpG island 11218 within coordinates
Gm57420 predicted gene, 57420 within coordinates
Rr55715 regulatory region 55715 within coordinates
Stam signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 358 bp upstream
Stamos signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand within coordinates
Tssr16223 transcription start site region 16223 118 bp downstream
Tssr16224 transcription start site region 16224 71 bp downstream
Tssr16225 transcription start site region 16225 348 bp upstream
Tssr16226 transcription start site region 16226 404 bp upstream
Tssr16227 transcription start site region 16227 475 bp upstream
Tssr22732 transcription start site region 22732 108 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory