rs250768117 SNP Detail

Summary

• ID
  rs250768117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:142212577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATAGTTGG GGGGCAGAGA
  TAGTGAGAGA GACAGAGTGA ACGTGAAAGG GGGGGACCAC AGAGAGGGAG AGAGGGAGAG
  AGGACAGCGA GAGGCGGGTA GGCTCACAGC GGGAGAGGAC AGCACGGAGA GAAACAGAAA
  GCGTATAATT AATCCACTTG GGTAGGCGAA GGCAGAGGGC GGACGTGAGG GGGAGGGAGT
  Y
  TGAGGCGAGG AGGAACGGGG AGGGGGCAGG AGGGGAGCTT AGGAAAGGTG GCGGGTAAGC
  GGGTGCGCGA GGGGGGGCGC ACCCTAAGCA GAGGAGAGGA TGCAACTTCG AAGGACCGAG
  GACGGTGTTG AGGGGGGAGG AATGGAGGCG TCACCCCGGC CACGGGCACC CAGCTCGGTT
  AGGGTCGACG GAGCCCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454619	MGP_WTSI_7_149844745	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250768117					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454619	MGP_WTSI_7_149844745	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142212577 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19967	CpG island 19967			within coordinates
Cpgi19968	CpG island 19968			1390 bp proximal
Gm49394	predicted gene, 49394			Intron
Igf2	insulin-like growth factor 2			Intron
				mRNA-UTR
Igf2os	insulin-like growth factor 2, opposite strand			853 bp upstream
Rr658247	regulatory region 658247			1355 bp distal
Rr658248	regulatory region 658248			854 bp distal
Rr658249	regulatory region 658249			15 bp distal
Rr658250	regulatory region 658250			147 bp proximal
Rr658251	regulatory region 658251			491 bp proximal
Rr658252	regulatory region 658252			639 bp proximal
Rr658253	regulatory region 658253			681 bp proximal
Rr658254	regulatory region 658254			864 bp proximal
Tssr70241	transcription start site region 70241			255 bp downstream
Tssr70242	transcription start site region 70242			211 bp downstream
Tssr70243	transcription start site region 70243			20 bp upstream
Tssr70244	transcription start site region 70244			70 bp upstream
Tssr70245	transcription start site region 70245			181 bp upstream
Tssr70246	transcription start site region 70246			263 bp upstream
Tssr70247	transcription start site region 70247			309 bp upstream
Tssr70248	transcription start site region 70248			384 bp upstream
Tssr70249	transcription start site region 70249			1494 bp upstream
Tssr70250	transcription start site region 70250			1614 bp upstream
Tssr70251	transcription start site region 70251			1640 bp upstream
Tssr70252	transcription start site region 70252			1737 bp upstream
Tssr70253	transcription start site region 70253			1783 bp upstream
Tssr70254	transcription start site region 70254			1814 bp upstream
Tssr70255	transcription start site region 70255			1891 bp upstream
Tssr75887	transcription start site region 75887			1354 bp upstream
Tssr75888	transcription start site region 75888			73 bp upstream
Tssr75889	transcription start site region 75889			642 bp downstream