rs250774424 SNP Detail

Summary

• ID
  rs250774424
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26494575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACAGGAA GATTTTGGCT
  AGTTCACATT CTGTCTTTTG CCTTTTTGGT GTAAAGAAGG AACTGTTTTT GGTTTTGTTT
  TTGTTATTTT TGTTTTTTTT TTTTTGTTTT GTTTTGTTTT GTTTTTTTGT TTTTCTCATG
  TTGACCTAGA CTAGGTCAAG TTTCAGTGTT TCTTGAAAGA TATGCTAAGG AACCACAGGC
  M
  CATTTATACC AAGCCAGCTG CCACATTTTA TATTCCTGAA AGACTCCTTC CTGTCTATCC
  CCCCACGACT CTTCTGGACG TGCCACATGG CCTTGGAGCT TTTCAGAAAA GTGTGACAAC
  CTTTCAGCAT GAGAGACTCA AGCAGCCTCA ATGCCAGGGC AGTTGCAGCT GCAGAAGTGG
  CATCCTCATG GCCACACCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385360832	MGP_WTSI_12_27129441	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250774424					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385360832	MGP_WTSI_12_27129441	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26494575 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	187 bp distal
Rr464137	regulatory region 464137	1799 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	823 bp downstream
Tssr112999	transcription start site region 112999	758 bp downstream
Tssr113000	transcription start site region 113000	657 bp downstream
Tssr113001	transcription start site region 113001	170 bp downstream
Tssr113002	transcription start site region 113002	146 bp downstream
Tssr113003	transcription start site region 113003	58 bp downstream
Tssr113004	transcription start site region 113004	7 bp downstream
Tssr113005	transcription start site region 113005	within coordinates
Tssr113006	transcription start site region 113006	358 bp upstream
Tssr113007	transcription start site region 113007	442 bp upstream
Tssr113008	transcription start site region 113008	610 bp upstream
Tssr113009	transcription start site region 113009	628 bp upstream
Tssr113010	transcription start site region 113010	778 bp upstream
Tssr115902	transcription start site region 115902	1706 bp upstream
Tssr115903	transcription start site region 115903	1376 bp upstream
Tssr115904	transcription start site region 115904	1352 bp upstream
Tssr115905	transcription start site region 115905	1054 bp upstream
Tssr115906	transcription start site region 115906	934 bp upstream
Tssr115907	transcription start site region 115907	875 bp upstream
Tssr115908	transcription start site region 115908	831 bp upstream
Tssr115909	transcription start site region 115909	747 bp upstream
Tssr115910	transcription start site region 115910	693 bp upstream
Tssr115911	transcription start site region 115911	645 bp upstream
Tssr115912	transcription start site region 115912	631 bp upstream
Tssr115913	transcription start site region 115913	596 bp upstream
Tssr115914	transcription start site region 115914	548 bp upstream
Tssr115915	transcription start site region 115915	505 bp upstream
Tssr115916	transcription start site region 115916	464 bp upstream
Tssr115917	transcription start site region 115917	414 bp upstream
Tssr115918	transcription start site region 115918	399 bp upstream
Tssr115919	transcription start site region 115919	368 bp upstream
Tssr115920	transcription start site region 115920	336 bp upstream
Tssr115921	transcription start site region 115921	within coordinates
Tssr115922	transcription start site region 115922	53 bp downstream
Tssr115923	transcription start site region 115923	136 bp downstream
Tssr115924	transcription start site region 115924	207 bp downstream
Tssr115925	transcription start site region 115925	222 bp downstream
Tssr115926	transcription start site region 115926	571 bp downstream
Tssr115927	transcription start site region 115927	615 bp downstream