rs250778396 SNP Detail

Summary

• ID
  rs250778396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:45947069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCCGCTA GGCCGGGGGC
  AGGCAATGGC AGGGGATGTG TGATTGCGGA CAGTGAGAGG GCCGTTGCTA TCATGCCCGG
  GCGCGCGGGC GTCGCCCGGT TCTGCTTGCT GGCTCTCGCT CTGCAGCTAC ATTGGCCGCT
  GGCGGCGTGC GAGCCGGGAT GGACCACAAG TAAGTGGCAG CGCGCAGATG GGTTCTGAGG
  Y
  GACTAGGGGT GGTGGTGATG ACTGAGGGTC TGAGAGTCGC TCTTGCATGC CGGCAGCTCC
  ATGACCGCTA TCCCTGCGGA CTCCGCCACT CCCCGGGTGT GAGTATCGCC ACCCCCAAGC
  CTAGGAGCCC AGGCTTTGTT CTCTTGTGGT GAGCCACGGG AGGTCGTGGA GCTAGTGCGC
  TCACTGCAAT CAGAAAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383234379	MGP_WTSI_11_45869744	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250778396					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383234379	MGP_WTSI_11_45869744	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:45947069 () rs orientation: forward

Symbol	Name	Function Class
Adam19	ADAM metallopeptidase domain 19	within coordinates
Cpgi2772	CpG island 2772	within coordinates
Cpgi2773	CpG island 2773	820 bp proximal
Gm72342	predicted gene, 72342	within coordinates
Rr402508	regulatory region 402508	236 bp downstream
Rr445869	regulatory region 445869	240 bp distal
Rr445870	regulatory region 445870	within coordinates
Rr445871	regulatory region 445871	1767 bp proximal
Rr445872	regulatory region 445872	1931 bp proximal
Tssr3474	transcription start site region 3474	275 bp downstream
Tssr101088	transcription start site region 101088	174 bp downstream
Tssr101089	transcription start site region 101089	145 bp downstream
Tssr101090	transcription start site region 101090	67 bp downstream
Tssr101091	transcription start site region 101091	12 bp downstream
Tssr107582	transcription start site region 107582	1867 bp downstream
Tssr107583	transcription start site region 107583	1932 bp downstream