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rs250785513 SNP Detail
Summary
  • ID
    rs250785513
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:49025187 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTCCGCCCT CACCTCTGCC
CACATTATCA ACACCTAGCC CCTCTTTAAG TGAGTATTTC TTGAGCAGTG TGAGGTTGGT
GGCAGCCTTG GTGGTGGTCG ACTTTGTGGT GGTCTTCATT AGTTACTTAG TTATTCAGTG
ATTTAGTCAA TCGCCTTGAG ATACTATGTT GCCCTGCTGG CTTTGAACTT GATTTGTAAG
Y
TAGGGTAGCC TCAAACTTGT ATTGATTTCT CCGCTGCTGT TAGGTTTGCA TTGCCCAAAT
TTATTCCTTT ATAGAATGTT TTAAATTGTA AAATAGTTAA TCCACATTTC TTACTAAAAG
TTGGAACTAA CCAGGGAGAA GCCTAGCATA GAAGGAAAAG TCCCCATGTT CTCTCTTCCC
CAGTTCATCC TGGCGTTGCT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss368235232 MGP_WTSI_6_48998252 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250785513 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss368235232 MGP_WTSI_6_48998252 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:49025187 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D6Dcr8 DNA Segment, Chr 6, Derry C. Roopenian 8 1803 bp distal
D6Mit142 DNA segment, Chr 6, Massachusetts Institute of Technology 142 1815 bp distal
Gm56981 predicted gene, 56981 within coordinates
Gpnmb glycoprotein (transmembrane) nmb within coordinates
Tssr56338 transcription start site region 56338 1996 bp downstream
Tssr56339 transcription start site region 56339 1982 bp downstream
Tssr56340 transcription start site region 56340 1792 bp downstream
Tssr56341 transcription start site region 56341 1532 bp downstream
Tssr56342 transcription start site region 56342 1500 bp downstream
Tssr56343 transcription start site region 56343 954 bp downstream
Tssr56344 transcription start site region 56344 930 bp downstream
Tssr56345 transcription start site region 56345 911 bp downstream
Tssr56346 transcription start site region 56346 858 bp downstream
Tssr56347 transcription start site region 56347 840 bp downstream
Tssr56348 transcription start site region 56348 817 bp downstream
Tssr56349 transcription start site region 56349 496 bp downstream
Tssr56350 transcription start site region 56350 467 bp downstream
Tssr56351 transcription start site region 56351 440 bp downstream
Tssr56352 transcription start site region 56352 421 bp downstream
Tssr56353 transcription start site region 56353 353 bp downstream
Tssr56354 transcription start site region 56354 339 bp downstream
Tssr56355 transcription start site region 56355 315 bp downstream
Tssr56356 transcription start site region 56356 297 bp downstream
Tssr56357 transcription start site region 56357 285 bp downstream
Tssr56358 transcription start site region 56358 267 bp downstream
Tssr56359 transcription start site region 56359 236 bp downstream
Tssr56360 transcription start site region 56360 189 bp downstream
Tssr56361 transcription start site region 56361 1629 bp upstream
Tssr56362 transcription start site region 56362 1857 bp upstream
Tssr60848 transcription start site region 60848 1845 bp upstream
Tssr60849 transcription start site region 60849 891 bp upstream
Tssr60850 transcription start site region 60850 838 bp upstream
Tssr60851 transcription start site region 60851 376 bp upstream
Tssr60852 transcription start site region 60852 347 bp upstream
Tssr60853 transcription start site region 60853 335 bp upstream
Tssr60854 transcription start site region 60854 318 bp upstream
Tssr60855 transcription start site region 60855 273 bp upstream
Tssr60856 transcription start site region 60856 246 bp upstream
Tssr60857 transcription start site region 60857 145 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory