rs250787162 SNP Detail

Summary

• ID
  rs250787162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3728278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCAGACA CTTGGTCTGT
  GCGCTTTTGC TCACGTCATG TGGATCAACA TGGCTTTTTA AATGGAGATA AATTGTTTTT
  TATGTGTGGG TGATTCATTT GATACTTCTC TATAAATTCA TACCCCAACT GTGTCTCTGA
  AGTGTGTCAC TGCAGTAATA GCCCAGGGAG GAGTTTTCAA CAATTAGCAT TGGATTCAAT
  R
  TGAGATGGTG CTTTAGAGAA CTTACAACTC TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TATGTGTGTG TGTGTGTAGA AAAGGGAGGG AGGGAGAGAG GGCTGGAGGG
  AGACTATAGT GTCTGTATAT GGGTGTGGAG ACCAGAGGAG GATTCTGAAA CTCCCTAATG
  TATTCGTATG CCCTTGACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320205094	CHEV_2_3644513	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250787162					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3728278 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	within coordinates
Rr367092	regulatory region 367092	411 bp upstream
Rr396754	regulatory region 396754	118 bp downstream
Tssr15911	transcription start site region 15911	56 bp downstream
Tssr22380	transcription start site region 22380	493 bp upstream
Tssr22381	transcription start site region 22381	433 bp upstream