rs250791326 SNP Detail

Summary

• ID
  rs250791326
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82292526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACACAAGT ACTAGGGATC
  CAATCTCCTG TCTTCACGCT TGCACAGTAG GCAGTAACAG CCCTGCATTT GATTTAACTG
  ATAATCCAAA GGTGAAACCT AAAAGTCAGA CGGGATGGCT GTCGTCTCTC TCCTGAATAC
  CAGGGGGACA TGGGTATGCC ACAGGGTGGG GCGGGGGAGG GCAGACTGGG GGGGGGGGGT
  R
  GGGACTGTGG AGACATGAAA CAATCCAAGT CCAGAGTATA TGGGAAAATC CCTTTAATGG
  GCTAATAATC ATACAGCAAA ACGGGAATCT GGTCCTATTG CTGCTTTATT AAACAAAAAT
  CTAAAAGGGA AGGTCTCTGA AACTGAGTTT ATGTCAAATA TCCCCCTCCC CCAGAAATTC
  TTAACAACTT TGAAAAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss362188038	MGP_WTSI_4_82020193	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs250791326					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362188038	MGP_WTSI_4_82020193	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82292526 () rs orientation: forward

Symbol	Name	Function Class
Nfib	nuclear factor I/B	within coordinates
Tssr1213	transcription start site region 1213	340 bp upstream
Tssr42237	transcription start site region 42237	140 bp upstream