About   Help   FAQ
rs250801454 SNP Detail
Summary
  • ID
    rs250801454
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr14:47120207 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGCGGGTGGC AGCACCGTTC
    TCGCTCCAGT CCAGCTCCGT TGGGATTCAC TCCTGTCCCA GCTCCGGAGG CTCCGGTGCC
    CTGGCCGTTG TAGAACACGC GGGTGGCAGC CGAGAGGAAT TCACCCGGAC CCCTCCCCTT
    CCCCAAACTT CTGTGTTTCT CTACGCAGAT CTTCCAATCT GCGCTCTTCC GCTCCTCCCA
    Y
    TTGGCTCCCT CCTCCTCTAT GGCCCGGGCT TAGGAATCCG TCCCTCCCCC CAACCCGCCG
    CCCGCCGGGC CCGGGGATCC TCCCCCCCTC CCCCGACTCC CCCGCGTGCC GCCGCCGCCG
    CCCGGGTTCC TCTCCCCCCG CTCGGGCGCT CCCTGCCAAG CCCATGATGT AATGGTGTAT
    GTTAATCAGT AGCATGTGGG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss390996425 MGP_WTSI_14_47502425 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250801454 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss390996425 MGP_WTSI_14_47502425 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:47120207 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
2810457G06Rik RIKEN cDNA 2810457G06 gene 948 bp downstream
Cpgi6376 CpG island 6376 within coordinates
Gm34934 predicted gene, 34934 32 bp upstream
Rr288762 regulatory region 288762 1407 bp distal
Rr297079 regulatory region 297079 within coordinates
Samd4 sterile alpha motif domain containing 4 207 bp upstream
Tssr4382 transcription start site region 4382 1280 bp upstream
Tssr125240 transcription start site region 125240 181 bp upstream
Tssr125241 transcription start site region 125241 208 bp upstream
Tssr125242 transcription start site region 125242 244 bp upstream
Tssr125243 transcription start site region 125243 1826 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/10/2024
MGI 6.24
The Jackson Laboratory