rs250804299 SNP Detail

Summary

• ID
  rs250804299
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84467195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGACAA GTCCCAAGGA
  GATTCTCTGC CTGTTCCTGG CACGGAGACA GCAGGGGACA GACTGGGGCA GGGGGAGTTC
  CCACCCTCGA AGAAATGGGC ACCCTCACGT GGGTTTCTCT TCACATTGAG AGCGTCTGTT
  TGGGCAACAG TTTGCAAAGT GTACTTTAAC CTACAGTTCT TTTTAGCTTT TTTTTTTTTT
  W
  AACTGTATGT GTTTTGCCTG CATGTATGTT TGTGCACTGC ATGTATTATT GTACACTGCA
  TGTATGTCTG TGCACTGCAT GTCTGTTGCC CGTGGATGCA GAAGACAGTG TGAATCCCCA
  GGAACTGGAG TTACAGACAC TTGTGAGCCA CCATATAGGT GCTGGGACCC AGCCAGGTCC
  TCTCTTAATG CTCTTGACCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375384461	MGP_WTSI_8_86264465	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250804299					SNP	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375384461	MGP_WTSI_8_86264465	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84467195 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	within coordinates
Cpgi20655	CpG island 20655	312 bp proximal
Gm46046	predicted gene, 46046	720 bp upstream
Rr368559	regulatory region 368559	428 bp downstream
Rr666301	regulatory region 666301	593 bp proximal
Rr666302	regulatory region 666302	750 bp proximal
Rr666303	regulatory region 666303	804 bp proximal
Rr666304	regulatory region 666304	1650 bp proximal
Tssr2618	transcription start site region 2618	453 bp upstream
Tssr2619	transcription start site region 2619	165 bp downstream
Tssr2620	transcription start site region 2620	710 bp upstream
Tssr2621	transcription start site region 2621	1989 bp upstream
Tssr78291	transcription start site region 78291	210 bp downstream
Tssr78292	transcription start site region 78292	188 bp downstream
Tssr78293	transcription start site region 78293	47 bp downstream
Tssr78294	transcription start site region 78294	within coordinates
Tssr78295	transcription start site region 78295	49 bp upstream
Tssr78296	transcription start site region 78296	69 bp upstream
Tssr78297	transcription start site region 78297	822 bp upstream
Tssr82049	transcription start site region 82049	496 bp upstream
Tssr82050	transcription start site region 82050	408 bp upstream
Tssr82051	transcription start site region 82051	134 bp upstream
Tssr82052	transcription start site region 82052	607 bp downstream