rs250804299 SNP Detail

Summary

• ID
  rs250804299
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84467195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGACAA GTCCCAAGGA
  GATTCTCTGC CTGTTCCTGG CACGGAGACA GCAGGGGACA GACTGGGGCA GGGGGAGTTC
  CCACCCTCGA AGAAATGGGC ACCCTCACGT GGGTTTCTCT TCACATTGAG AGCGTCTGTT
  TGGGCAACAG TTTGCAAAGT GTACTTTAAC CTACAGTTCT TTTTAGCTTT TTTTTTTTTT
  W
  AACTGTATGT GTTTTGCCTG CATGTATGTT TGTGCACTGC ATGTATTATT GTACACTGCA
  TGTATGTCTG TGCACTGCAT GTCTGTTGCC CGTGGATGCA GAAGACAGTG TGAATCCCCA
  GGAACTGGAG TTACAGACAC TTGTGAGCCA CCATATAGGT GCTGGGACCC AGCCAGGTCC
  TCTCTTAATG CTCTTGACCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375384461	MGP_WTSI_8_86264465	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250804299					SNP	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375384461	MGP_WTSI_8_86264465	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84467195 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adgre5	adhesion G protein-coupled receptor E5			Intron
				Noncoding-Transcript-Variant
Gm46046	predicted gene, 46046			720 bp upstream
Rr368559	regulatory region 368559			428 bp downstream
Rr666301	regulatory region 666301			593 bp proximal
Rr666302	regulatory region 666302			750 bp proximal
Rr666303	regulatory region 666303			804 bp proximal
Rr666304	regulatory region 666304			1650 bp proximal
Tssr2618	transcription start site region 2618			453 bp upstream
Tssr2619	transcription start site region 2619			165 bp downstream
Tssr2620	transcription start site region 2620			710 bp upstream
Tssr2621	transcription start site region 2621			1989 bp upstream
Tssr78291	transcription start site region 78291			210 bp downstream
Tssr78292	transcription start site region 78292			188 bp downstream
Tssr78293	transcription start site region 78293			47 bp downstream
Tssr78294	transcription start site region 78294			within coordinates
Tssr78295	transcription start site region 78295			49 bp upstream
Tssr78296	transcription start site region 78296			69 bp upstream
Tssr78297	transcription start site region 78297			822 bp upstream
Tssr82049	transcription start site region 82049			496 bp upstream
Tssr82050	transcription start site region 82050			408 bp upstream
Tssr82051	transcription start site region 82051			134 bp upstream
Tssr82052	transcription start site region 82052			607 bp downstream