rs250805770 SNP Detail

Summary

• ID
  rs250805770
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3284452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGATGGGG TGGTCACTGC
  ATCCCATGTG GGATGTTCAC TGCATCTCAG GTAAGATGGT CACTGCATCT CAGGAGGGAT
  GGATACTACA TCTCAGGTGG GGTGGTCACT GCATCACAGG TGGGATTGTC ATAGTATCTC
  ACGTGAGATA GTCACAACAT CTCAGGTGGC ATGGTCACTG CATCTCAGGT GGGACAGTCA
  S
  TGCATCACTA GTGGGATTGT CATCCCATCT CACTTGGGAT GGTCACAACT TCACACGTGG
  GATAGTCACT GAATCTTAGG TGGATGGTCA CTGCATTTCT GTTAAGACGA CTCTCTACAT
  CTCAGGTTGG ATAGTCATTG CATCCCATGT GGGATTTTCA CTGTATCTCA GGTAAGATGG
  TGACTTCATC TCAGGAGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384972818	MGP_WTSI_12_3234452	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250805770					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384972818	MGP_WTSI_12_3234452	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3284452 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4353	CpG island 4353	473 bp proximal
Gm60416	predicted gene, 60416	within coordinates
Rab10os	RAB10, member RAS oncogene family, opposite strand	1339 bp upstream
Rr462064	regulatory region 462064	113 bp proximal
Rr462065	regulatory region 462065	1074 bp proximal
Rr462066	regulatory region 462066	1276 bp proximal
Rr462067	regulatory region 462067	1343 bp proximal
Rr462068	regulatory region 462068	1347 bp proximal
Rr462069	regulatory region 462069	1519 bp proximal
Tssr112476	transcription start site region 112476	1037 bp upstream
Tssr112477	transcription start site region 112477	1282 bp upstream
Tssr112478	transcription start site region 112478	1350 bp upstream
Tssr115578	transcription start site region 115578	838 bp downstream