rs250811015 SNP Detail

Summary

• ID
  rs250811015
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155923870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGGCTGT TCCCGCTCCT
  AAAGAAATCT GGACCACAAT GCCATCATGT TGTCCCCAGG GAGCCCACTA TGGTCCCAGA
  GAAGGGCATA GTAAAATCAC CCTCAGTCAA AGTGAAATCA GAAGACACCG GATCTGGCAG
  GGAGAATACA AGAAGGTGGG GGTAGGGGTG GTGGTGGGGG TGGGGGTGGT GGGGTAGGGG
  M
  GCAGCCCAGG TTCTCTGGCC TGGCTGATCA CATAGGAGGA TGTCAGCGCA GAGGATGCAG
  ATCAAACACC AGTTCTGTCG AAACTCAGGA AGTTTACCAG ATGCTTGGCA CCCGCTTGGC
  CTCAGGAATC TTCACATCCA GGCCTCGTCT TCTGTCCCAG GACTGAGCTA CTGCTCCTCC
  CCAAGACTGA CCAGTGACTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363804800	MGP_WTSI_4_155213522	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	A	C	C	A	C	C	A	A	A	A	C	A	A	C	C	A	A	A	A	C	A	A	C	A	C	C	C	C	C	C	C	A	A	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250811015					SNP	C	C	C	A	C	C	A	C	C	A	A	A	A	C	A	A	C	C	A	A	A	A	C	A	A	C	A	C	C	C	C	C	C	C	A	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363804800	MGP_WTSI_4_155213522	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155923870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	1399 bp proximal
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	267 bp upstream
Mxra8os	matrix-remodelling associated 8, opposite strand	79 bp downstream
Rr398927	regulatory region 398927	1771 bp upstream
Rr606588	regulatory region 606588	1178 bp distal
Rr606589	regulatory region 606589	within coordinates
Rr606590	regulatory region 606590	755 bp proximal
Rr606591	regulatory region 606591	1671 bp proximal
Rr606592	regulatory region 606592	1698 bp proximal
Rr606593	regulatory region 606593	1734 bp proximal
Tssr40724	transcription start site region 40724	262 bp upstream
Tssr40725	transcription start site region 40725	280 bp upstream
Tssr40726	transcription start site region 40726	311 bp upstream
Tssr40727	transcription start site region 40727	356 bp upstream
Tssr40728	transcription start site region 40728	414 bp upstream
Tssr40729	transcription start site region 40729	1688 bp upstream
Tssr40730	transcription start site region 40730	1708 bp upstream
Tssr40731	transcription start site region 40731	1733 bp upstream
Tssr40732	transcription start site region 40732	1755 bp upstream
Tssr40733	transcription start site region 40733	1999 bp upstream
Tssr44980	transcription start site region 44980	1615 bp downstream
Tssr44981	transcription start site region 44981	1681 bp downstream