rs250820919 SNP Detail

Summary

• ID
  rs250820919
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74700781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTTTAA TAGAGTCTTG
  GCGCTGTATG GTCAGAGTCC ATAGTGGTTA GGTAGAATGA ATCGTGGATT CCCAGAACGG
  AGCCTTTACT TGCAGGACTA CAGTTCCCAG AATTCCGCTC GCAAGAGTTC CACCGTGTCG
  ACAAGTTTGC GCGTGCGCAA ATTCCTTGCA CTTTCTCTCT CCCTCCCCCC AAGTCCCTCC
  T
  TCTCCCCCCC CCCCCCCCCC CATTCTCTAG GCTGCACAAG GGCTGGGATT CGGCGCGCTT
  GCCTCGGGCC CTCCCCCTCC CATTCCTTTC TGGCCTTAGA TCTGTCCGCT GGGGGCGCGC
  TCTGTGTGGG ACAGAAAGCG GCAGAGCGTG GGTCGCGTGG CGGAGCTTGG TTGCTAGGGA
  CACCTGAGGT CGCCCGCTCG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57L/J	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss350128229	MGP_WTSI_1_74708196	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57L/J	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs250820919					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350128229	MGP_WTSI_1_74708196	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74700781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi388	CpG island 388	within coordinates
Gm70804	predicted gene, 70804	209 bp upstream
Rr371526	regulatory region 371526	within coordinates
Rr413230	regulatory region 413230	228 bp distal
Rr413231	regulatory region 413231	within coordinates
Rr413232	regulatory region 413232	134 bp proximal
Rr413233	regulatory region 413233	176 bp proximal
Tssr7442	transcription start site region 7442	54 bp downstream
Tssr7443	transcription start site region 7443	11 bp upstream
Tssr7444	transcription start site region 7444	76 bp upstream
Tssr7445	transcription start site region 7445	92 bp upstream
Tssr7446	transcription start site region 7446	172 bp upstream
Tssr7447	transcription start site region 7447	474 bp upstream
Ttll4	tubulin tyrosine ligase-like family, member 4	23 bp upstream