rs250830000 SNP Detail

Summary

• ID
  rs250830000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAG CAAATTGTTG GTAGCAAATC
  R
  TTGAGGGCTG AGGGGGAATG TTAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605469	CHEV_2_164158763	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250830000					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174947 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	302 bp upstream
Tssr745	transcription start site region 745	345 bp upstream
Tssr746	transcription start site region 746	356 bp upstream
Tssr747	transcription start site region 747	369 bp downstream
Tssr748	transcription start site region 748	390 bp upstream
Tssr749	transcription start site region 749	422 bp upstream
Tssr750	transcription start site region 750	435 bp upstream
Tssr751	transcription start site region 751	489 bp upstream
Tssr752	transcription start site region 752	558 bp upstream
Tssr753	transcription start site region 753	565 bp upstream
Tssr754	transcription start site region 754	1237 bp upstream
Tssr21562	transcription start site region 21562	291 bp downstream
Tssr21563	transcription start site region 21563	282 bp downstream
Tssr21564	transcription start site region 21564	251 bp downstream
Tssr21565	transcription start site region 21565	238 bp downstream
Tssr21566	transcription start site region 21566	227 bp downstream
Tssr21567	transcription start site region 21567	215 bp downstream
Tssr21568	transcription start site region 21568	206 bp downstream
Tssr21569	transcription start site region 21569	268 bp upstream
Tssr21570	transcription start site region 21570	330 bp upstream
Tssr21571	transcription start site region 21571	361 bp upstream
Tssr21572	transcription start site region 21572	378 bp upstream
Tssr21573	transcription start site region 21573	407 bp upstream
Tssr21574	transcription start site region 21574	471 bp upstream
Tssr21575	transcription start site region 21575	1249 bp upstream
Tssr21576	transcription start site region 21576	1265 bp upstream
Tssr21577	transcription start site region 21577	1284 bp upstream
Tssr27433	transcription start site region 27433	326 bp downstream
Tssr27434	transcription start site region 27434	349 bp downstream
Tssr27435	transcription start site region 27435	377 bp downstream
Tssr27436	transcription start site region 27436	396 bp downstream
Tssr27437	transcription start site region 27437	417 bp downstream
Tssr27438	transcription start site region 27438	447 bp downstream
Tssr27439	transcription start site region 27439	461 bp downstream
Tssr27440	transcription start site region 27440	471 bp downstream
Tssr27441	transcription start site region 27441	526 bp downstream
Tssr27442	transcription start site region 27442	534 bp downstream
Tssr27443	transcription start site region 27443	597 bp downstream
Tssr27444	transcription start site region 27444	606 bp downstream
Tssr27445	transcription start site region 27445	1222 bp downstream
Tssr27446	transcription start site region 27446	1266 bp downstream
Tssr27447	transcription start site region 27447	1361 bp downstream
Tssr27448	transcription start site region 27448	1975 bp downstream