rs250837561 SNP Detail

Summary

• ID
  rs250837561
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117430348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCACCTT TGTTGGAAGT
  GAAGAGGAAT GTAGAGCTGA AGACAAGCCT GGTCAAGTTC TCCTCCCGAG TGCCCCGTCA
  GCAAGCAGGC TCAAGAGAGG TCCTGACCAG ATGGAGGATG CCTTGGAGCC CGTAAAGAAA
  CGGACACGAG GCATGGGTGC AGTGACCAAA GTTGACATAT CCCGTCCCAG AGGACCACTC
  C
  TCAGCACAGT GTCACAGACC CAGGGCCACA CTGCAGCTCA GAAAGGCCCT AAGAAGGCAG
  GACCTCGTGG GTGCTCTACT GTTGGTACAG TGCTGAGGAA CCAGAAGCCA GCTCCCACTG
  TTCCTGCCCA GAAGCCTGGC ACATCCACTG CTCCTGTAGT GGTAAGGAAG AGACCTGGCA
  AACGCCCTTG CCTGGGACCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323497997	CHEV_10_117031499	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250837561					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117430348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2233	CpG island 2233	125 bp distal
Gm63651	predicted gene, 63651	283 bp upstream
Kifc5c-ps	kinesin family member C5C, pseudogene	within coordinates
Rr402265	regulatory region 402265	1378 bp upstream
Rr439564	regulatory region 439564	1241 bp proximal