rs250840352 SNP Detail

Summary

• ID
  rs250840352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:65754949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGAAGAGG GACCTTAATG
  TCCTTTAAGA GAATGCTCAT TTAATGACTT ACGTTGTCCT ATCAGGCTCT ATCTTTTAAG
  TTCTACCAGC TTCCAATAGT AGCACTGGAT AATGAATATG TCTATGGATG AATCCATTGA
  CTAGGCTAGA ACATTCCTTA TACAATCACT TCCCAAAAGT ATTCAACACA TGAGTTTTGG
  Y
  GAGACATTAC CAAGGACTAC ATTACAGTCC TTTTAACAGC TACTCTGCTT TCTACTCTGA
  TTTCTATTTT CTGTGATAAA ACATTCTGGC CAAAAGGAAC TTGGGGAGGA AAGGACTTTT
  TGGGGGAGAG GACAGGGCAA GAGGCGTATG TTTCCCATCT TGGTCCATCA TTGAAAAATG
  TCAGGGCCAA GAGCTCAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321809791	CHEV_6_65727959	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250840352					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:65754949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17503	CpG island 17503	676 bp proximal
Gm16838	predicted gene, 16838	within coordinates
Prdm5	PR domain containing 5	1023 bp upstream
Tssr56854	transcription start site region 56854	1029 bp upstream
Tssr61222	transcription start site region 61222	1671 bp downstream
Tssr61223	transcription start site region 61223	1724 bp downstream
Tssr61224	transcription start site region 61224	1732 bp downstream
Tssr61225	transcription start site region 61225	1749 bp downstream
Tssr61226	transcription start site region 61226	1808 bp downstream