rs250842772 SNP Detail

Summary

• ID
  rs250842772
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:75293686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTAGACGG CTTTAAAATG TCTAATCTTT
  AATGAAAGTC CAGCTACTCC TGATGCTAAG TTGACATTAT TAAATGATTT CAGGAGCAAG
  TTTCCCAGGA AGAAAGAAAC CCTTGGCTTC CCTCCATGtt tttttttttt tttttttttt
  W
  ACAGCTGTGC TCATGGAGGC CAGGTTGGCC TTCCACTCCT GATCCCCCTG CCACCTGTTG
  AATGCTGGGC CAGGCCCAGC CTCCAGGTGA TCTACTGAGG AAGAGATAGA GGTTTCTCTG
  CAAGTTTCAA AGCTTCCCCA GGTTTTAACA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323008197	CHEV_9_75234211	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250842772					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75293686 () rs orientation: forward

Symbol	Name	Function Class
Gm67678	predicted gene, 67678	614 bp downstream
Mapk6	mitogen-activated protein kinase 6	378 bp downstream
Rr683127	regulatory region 683127	1383 bp distal
Tssr90534	transcription start site region 90534	822 bp downstream
Tssr90535	transcription start site region 90535	1064 bp downstream
Tssr90536	transcription start site region 90536	1483 bp downstream
Tssr90537	transcription start site region 90537	1555 bp downstream
Tssr90538	transcription start site region 90538	1586 bp downstream