rs250851227 SNP Detail

Summary

• ID
  rs250851227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126620170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTCCTTC CAGCCCCATT
  CTTGGGGAAG ACCCAGTATC TTGTGCATAC CTTCTTAGCC CTTCTTTTAG GGGTTCCCTT
  GTTGCTTTCA GCAGAGGCTG AGGGGGAGGG GATCTTCTCC CGATGGTACG ACGCACCCAG
  CACCACCCTC TAGTTCGCCT GGCACCTGCA TTCTCATGCC ACCCAGCTGT CTGTCGTCCA
  Y
  ACCTACCAGC AGTCTCAGTT GGTCCCAGTC TCATCCGCTG CCAGCCTCGG GACTGCTCCT
  GCGTCCCGCC GCCACCGCCG CTGCTGCTGC AGCAGCCGCA GACCGGGGAG GGAACAAGTC
  TGTGAGCAAT GAAGGGAGGT GGCGGGTCTC CCCTCCTCTC TCCTCCGGGT TTGCTCGGCC
  CTTCTTCTCT GGTCCCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373079214	MGP_WTSI_7_134164512	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250851227					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373079214	MGP_WTSI_7_134164512	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126620170 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19726	CpG island 19726	within coordinates
Gm42742	predicted gene 42742	within coordinates
Gm53372	predicted gene, 53372	219 bp upstream
Maz	MYC-associated zinc finger protein (purine-binding transcription factor)	1136 bp downstream
Prrt2	proline-rich transmembrane protein 2	within coordinates
Rr655670	regulatory region 655670	within coordinates
Rr655671	regulatory region 655671	129 bp proximal
Rr655672	regulatory region 655672	320 bp proximal
Rr655673	regulatory region 655673	400 bp proximal
Tssr69153	transcription start site region 69153	353 bp upstream
Tssr69154	transcription start site region 69154	384 bp upstream
Tssr69155	transcription start site region 69155	440 bp upstream
Tssr74890	transcription start site region 74890	1500 bp upstream
Tssr74891	transcription start site region 74891	1300 bp upstream
Tssr74892	transcription start site region 74892	1195 bp upstream
Tssr74893	transcription start site region 74893	1081 bp upstream
Tssr74894	transcription start site region 74894	888 bp upstream
Tssr74895	transcription start site region 74895	855 bp upstream
Tssr74896	transcription start site region 74896	678 bp upstream
Tssr74897	transcription start site region 74897	662 bp upstream
Tssr74898	transcription start site region 74898	48 bp downstream
Tssr74899	transcription start site region 74899	79 bp downstream
Tssr74900	transcription start site region 74900	143 bp downstream
Tssr74901	transcription start site region 74901	168 bp downstream
Tssr74902	transcription start site region 74902	207 bp downstream
Tssr74903	transcription start site region 74903	585 bp downstream
Tssr74904	transcription start site region 74904	615 bp downstream