About   Help   FAQ
rs250859565 SNP Detail
Summary
  • ID
    rs250859565
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr11:3124217 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ACGGAAAACT ACTGACTCAT AAATCTGATG CCATATTAAA
    ATGAGCCAAT TCCTTGGAAG CTCAGTAAAG GGACTAAATC ATCTTACACT ACTAAAGCTT
    C
    AAGTCAAGCT AAAACCTCTT CAACAAAGAG AATCCAGGTA TAGAGAACCT TATCAGATTT
    TACTAAACAT TTAACAAAGA AATAATTTCA GCTCATTCA                       
    
    C = C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss323546767 CHEV_11_3074220 CHEVERUD SCREENING_POP f SNP C C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs250859565 SNP C C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:3124217 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2457 CpG island 2457 1636 bp distal
Cpgi2458 CpG island 2458 411 bp distal
Rr441481 regulatory region 441481 1767 bp distal
Rr441484 regulatory region 441484 1267 bp distal
Rr441485 regulatory region 441485 393 bp distal
Rr441486 regulatory region 441486 within coordinates
Rr441487 regulatory region 441487 961 bp proximal
Rr441488 regulatory region 441488 1392 bp proximal
Rr441489 regulatory region 441489 1462 bp proximal
Sfi1 Sfi1 homolog, spindle assembly associated (yeast) within coordinates
Tssr106448 transcription start site region 106448 1420 bp upstream
Tssr106449 transcription start site region 106449 888 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory