rs250862187 SNP Detail

Summary

• ID
  rs250862187
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123622473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATGCTGC CCTTCACTTC
  TCTTTCTCTC TCTCCCCAGA TCGAGGCTCA GTGAGACACT GACAAGTAGC TAGAGCTGCA
  GCAGGAAAAA CAAGGCTAGA TTGATCCTGA CCCTTTCCTA ACCCTGCCCC TCACTGCTAA
  GTGACTCCAC AGACAACTTC CCGAAAAGGC TGGCCATACT CCATAAAGCC CTGCATATTC
  R
  GGCAGAGAAT TCTAGTACCT AGGGCAAAAC AGGACAAGTG GGAAGGTCAC TTCCACCCTC
  TTGGGTAGTA GACAACCCTG TCCACAGGCC TGAGAGTTCA AGGCCTGAGG AGCTGAGGTA
  GAGTATGGGA ATAATTTTTG CCTAGAGTAT CCTATCAAGT TACTCTGCTA AAAGCCAAAT
  GCCTGTGAGG GAGGCAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323234348	CHEV_9_123702526	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250862187					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123622473 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	1342 bp upstream
Tssr92158	transcription start site region 92158	1336 bp upstream
Tssr92159	transcription start site region 92159	1312 bp upstream
Tssr92160	transcription start site region 92160	937 bp upstream
Tssr92161	transcription start site region 92161	916 bp upstream
Tssr92162	transcription start site region 92162	1417 bp downstream