rs250875000 SNP Detail

Summary

• ID
  rs250875000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149983644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAAGCAT GTTATAAAGA
  CTGACATTTT AGACATTTTG AAGGCCCTGT AAGTGTTTAT TAATTAGTTA GAACTTAATT
  GATTAAAAAA TATATCCAAA GCACTATAGG CATTAGAATT CGTGCATCAA GAAATGATGA
  CAAATAATAC TGTTATTTAT ATAAATAACT AAAAAGGGTG TCTAATGAAG AAATATATTT
  Y
  ATTACAAAGA AATTATAAAA CATTTTGAAG ATTATATGCT TTAAAAGTTT AAGATGAAAA
  AATAATCAAC CTTAGAAAAA ATGTATAAAA ATATATAAAT TGTTAATGTC ATTGATTAAA
  AAAAAAAAAA ACTAGCCAAC ATGATTTTTG TGAATATCAA CCTGCTGATT GAACCTGGGA
  ATTCAGGTTA AGTATGTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss351888792	MGP_WTSI_1_151955023	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs250875000					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351888792	MGP_WTSI_1_151955023	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149983644 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr9286	transcription start site region 9286	1924 bp downstream
Tssr9287	transcription start site region 9287	1408 bp downstream
Tssr9288	transcription start site region 9288	1294 bp downstream
Tssr9289	transcription start site region 9289	1277 bp downstream
Tssr9290	transcription start site region 9290	1123 bp downstream
Tssr9291	transcription start site region 9291	1075 bp downstream
Tssr9292	transcription start site region 9292	947 bp downstream
Tssr9293	transcription start site region 9293	931 bp downstream
Tssr9294	transcription start site region 9294	908 bp downstream
Tssr9295	transcription start site region 9295	881 bp downstream
Tssr9296	transcription start site region 9296	869 bp downstream
Tssr9297	transcription start site region 9297	856 bp downstream
Tssr9298	transcription start site region 9298	830 bp downstream
Tssr9299	transcription start site region 9299	812 bp downstream
Tssr9300	transcription start site region 9300	793 bp downstream
Tssr9301	transcription start site region 9301	660 bp downstream
Tssr9302	transcription start site region 9302	636 bp downstream
Tssr9303	transcription start site region 9303	560 bp downstream
Tssr9304	transcription start site region 9304	540 bp downstream
Tssr9305	transcription start site region 9305	531 bp downstream
Tssr9306	transcription start site region 9306	519 bp downstream
Tssr9307	transcription start site region 9307	493 bp downstream
Tssr9308	transcription start site region 9308	476 bp downstream
Tssr9309	transcription start site region 9309	454 bp downstream
Tssr9310	transcription start site region 9310	429 bp downstream
Tssr9311	transcription start site region 9311	406 bp downstream
Tssr9312	transcription start site region 9312	388 bp downstream
Tssr9313	transcription start site region 9313	380 bp downstream
Tssr9314	transcription start site region 9314	361 bp downstream
Tssr9315	transcription start site region 9315	269 bp downstream
Tssr9316	transcription start site region 9316	84 bp downstream
Tssr9317	transcription start site region 9317	182 bp upstream
Tssr9318	transcription start site region 9318	911 bp upstream