rs250886433 SNP Detail

Summary

• ID
  rs250886433
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:56982488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGGCTT AGAGACCGCC
  ATTAACTCAC TCTGCTAAGG AGGAATGCCC ACCCCCCTTT TTTTTGAAGG GCTGGCCTTA
  GGGTTCCTAA ATTCAGACTA TTCCTGCCCT TTCGCGAATG GTTGCGATTA CAGCCCTTCC
  CCTTGAACAG TCATTCTTAA GACCATATCC TTCACACAAT CTGGAATTTT TACTCCTTCT
  S
  TGAACGTAAG TGCACACTCA AGGTTTATTT ATGCAGTGGT CTGTGTGAGG TTTTCAGCCT
  CTCTTCCTCC AGTTTAAAAT GTCCCTGGAT CTACCCGACC AATAGAGTAT ACATTTTCCC
  TTCATGCTCC GCCTTCCGGA GGCTTGCCCA GGCGGTGACA TTTAAAGGCC TCCGCTGGGT
  TATCTCCGCC CCCTGAGGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377681877	MGP_WTSI_9_56923011	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	C	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250886433					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	C	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377681877	MGP_WTSI_9_56923011	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56982488 () rs orientation: forward

Symbol	Name	Function Class
2700012I20Rik	RIKEN cDNA 2700012I20 gene	within coordinates
Cpgi21807	CpG island 21807	1002 bp distal
Cpgi21808	CpG island 21808	597 bp distal
Cpgi21809	CpG island 21809	471 bp proximal
Gm57026	predicted gene, 57026	439 bp downstream
Rr368762	regulatory region 368762	817 bp downstream
Rr401392	regulatory region 401392	within coordinates
Rr401393	regulatory region 401393	732 bp upstream
Rr679583	regulatory region 679583	1452 bp distal
Rr679584	regulatory region 679584	1708 bp distal
Rr679585	regulatory region 679585	1628 bp distal
Rr679586	regulatory region 679586	within coordinates
Rr679587	regulatory region 679587	145 bp proximal
Rr679588	regulatory region 679588	630 bp proximal
Rr679589	regulatory region 679589	822 bp proximal
Rr679590	regulatory region 679590	1206 bp proximal
Rr679591	regulatory region 679591	1618 bp proximal
Sin3a	transcriptional regulator, SIN3A (yeast)	Intron
Tssr2884	transcription start site region 2884	231 bp upstream
Tssr85284	transcription start site region 85284	1450 bp downstream
Tssr85285	transcription start site region 85285	1332 bp downstream
Tssr85286	transcription start site region 85286	1139 bp upstream
Tssr85287	transcription start site region 85287	1191 bp upstream